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Commit 52c66590 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix Single Read in CI

parent 5011fa37
3 merge requests!68Develop,!67Resolve "Change Single Read to Single End for submitted endness",!66Resolve "Change Single Read to Single End for submitted endness"
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.gitlab-ci.yml
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......@@ -389,7 +389,7 @@ uploadQC:
done
echo all old mRNA QC RIDs deleted
fi
rid=$(singularity run 'docker://gudmaprbk/deriva1.4:1.0.0' python3 ./workflow/scripts/upload_qc.py -r 17-BTFJ -e 17-BVDJ -p "Single Read" -s forward -l 35 -w 5 -f 1 -t 1 -n "This is a test mRNA QC" -o staging.gudmap.org -c ${cookie} -u F)
rid=$(singularity run 'docker://gudmaprbk/deriva1.4:1.0.0' python3 ./workflow/scripts/upload_qc.py -r 17-BTFJ -e 17-BVDJ -p "Single End" -s forward -l 35 -w 5 -f 1 -t 1 -n "This is a test mRNA QC" -o staging.gudmap.org -c ${cookie} -u F)
echo ${rid} test mRNA QC created
uploadProcessedFile:
......
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