Commits · ef4ac2348374dfe52a891260ce5c30f632764232 · GUDMAP_RBK / RNA-seq

Apr 25, 2020
- Change pipeline tracking to curl · ef4ac234
  Gervaise Henry authored 4 years ago
  
  ef4ac234
- Add trackStart · 53505b86
  Gervaise Henry authored 4 years ago
  
  53505b86
- Add more columns · c255d989
  Gervaise Henry authored 4 years ago
  
  c255d989
Apr 24, 2020
- Merge branch '47-move.inference' into 'develop' · 9dcdb645
  Venkat Malladi authored 4 years ago
```
Resolve "Move inference to start of pipeline"

Closes #47

See merge request !28
```
  9dcdb645
- Resove merge comments from @venkat.malladi · 69d74285
  Gervaise Henry authored 4 years ago
  
  69d74285
Apr 22, 2020
- Update README.md · 126fe448
  Gervaise Henry authored 4 years ago
  
  126fe448
- Remove processes from AWS configs · 170b0706
  Gervaise Henry authored 4 years ago
  
  170b0706
- Update dag · 020d5078
  Gervaise Henry authored 4 years ago
  
  020d5078
- Fix dataQC pytest · 4632cfb9
  Gervaise Henry authored 4 years ago
  
  4632cfb9
- Add && to multiline inferMetadata unit ci · 99632fd2
  Gervaise Henry authored 4 years ago
  
  99632fd2
- Move parseMetadata unit ci if statements to single line · e7937756
  Gervaise Henry authored 4 years ago
  
  e7937756
- Fix inferMetadata unit · 1310010d
  Gervaise Henry authored 4 years ago
  
  1310010d
- Fix ci yml syntax · 4aa0f8d6
  Gervaise Henry authored 4 years ago
  
  4aa0f8d6
- Add unit CI test for (new) inferMetadata · c17b8a62
  Gervaise Henry authored 4 years ago
  
  c17b8a62
- Fix align unit summary output · 488fff57
  Gervaise Henry authored 4 years ago
  
  488fff57
- Change parseMetadata CI unit test to match new mechanism · c53ffd6c
  Gervaise Henry authored 4 years ago
  
  c53ffd6c
- Add inference and apply new naming standards · 53c34278
  Gervaise Henry authored 4 years ago
  
  53c34278
Apr 07, 2020
- Reorder processes · 1d48e1ef
  Gervaise Henry authored 4 years ago
  
  1d48e1ef
- Merge develop into branch · 7ec6bd65
  Gervaise Henry authored 4 years ago
  
  7ec6bd65
- Add align sampled data · 2b89cc74
  Gervaise Henry authored 4 years ago
  
  2b89cc74
- Merge branch '45-parallelizeTin' into 'develop' · 469c576a
  Gervaise Henry authored 4 years ago
```
Resolve "Chunk bam for parallel tin calculation"

Closes #45

See merge request !26
```
  469c576a
- Fix nextflow/runner error, change singularity cache, and limit processes in unit ci to 20 · c0adecfd
  Gervaise Henry authored 4 years ago
  
  c0adecfd
Apr 03, 2020
- Update docs/dag.png · ab85953a
  Gervaise Henry authored 4 years ago
  
  ab85953a
Apr 02, 2020
- Fix infer.csv output · cc6ffe96
  Gervaise Henry authored 4 years ago
  
  cc6ffe96
- Deleted dag.png · a08a23e8
  Gervaise Henry authored 4 years ago
  
  a08a23e8
- Merge branch 'develop' into '45-parallelizeTin' · ca9e0973
  Gervaise Henry authored 4 years ago
```
# Conflicts:
#   workflow/rna-seq.nf
```
  ca9e0973
- Update pipeline status · 563eabd7
  Gervaise Henry authored 4 years ago
  
  563eabd7
- Update rna-seq.nf · b292ccee
  Gervaise Henry authored 4 years ago
  
  b292ccee
- Update rna-seq.nf · 862e319e
  Gervaise Henry authored 4 years ago
  
  862e319e
Apr 01, 2020
- Changed infer.tsv back to infer.csv with appropriate formatting changes. · 4346896f
  Jonathan Gesell authored 4 years ago
  
  4346896f
- Added new dag.png · e430479f
  Jonathan Gesell authored 4 years ago
  
  e430479f
Mar 30, 2020
- Corrected typo in dedup step. · 98bed3b8
  Jonathan Gesell authored 4 years ago
  
  98bed3b8
- Used betterd CHRs for tests. · 622ebfca
  Jonathan Gesell authored 4 years ago
  
  622ebfca
Mar 27, 2020
- Fixed typo · 4ba43359
  Jonathan Gesell authored 4 years ago
  
  4ba43359
- Updated inferMetadata testing script · ad41969d
  Jonathan Gesell authored 4 years ago
  
  ad41969d
- Updated inferMetadata testing script · 45e96a6b
  Jonathan Gesell authored 4 years ago
  
  45e96a6b
- Updated inferMetadata testing script · 8ce8b56e
  Jonathan Gesell authored 4 years ago
  
  8ce8b56e
- Update test_dedupReads.py · d0d886a4
  Jonathan Gesell authored 4 years ago
  
  d0d886a4
- Update test_dedupReads.py · f8ab64d0
  Jonathan Gesell authored 4 years ago
  
  f8ab64d0
- Update .gitlab-ci.yml · e90a7437
  Jonathan Gesell authored 4 years ago
  
  e90a7437