Updated inferMetadata testing script

.gitlab-ci.yml

@@ -90,7 +90,7 @@ inferMetadata:
   stage: unit
   script:
   - for i in {"chrNC_000001.11","chrNC_000002.12","chrNC_000019.10"}; do
-    echo " tin.py -i tin.py -i /test_data/bam/small/Q-Y5JA_1M.se.sorted.deduped.${i}.bam -r /project/BICF/BICF_Core/shared/gudmap/references/GRCh38.p12.v31/bed/genome.bed; cat Q-Y5JA_1M.se.sorted.deduped.${i}.tin.xls | tr -s \"\\w\" \"\\t\" | grep -P \"\\t${i}\\t\"" | singularity run 'docker://bicf/rseqc3.0:2.0.0' parallel -j `nproc` -k > Q-Y5JA_1M.se.sorted.deduped.tin.xls
+    echo " tin.py -i tin.py -i /test_data/bam/small/Q-Y5JA_1M.se.sorted.deduped.${i}.bam -r /project/BICF/BICF_Core/shared/gudmap/references/GRCh38.p12.v31/bed/genome.bed; cat Q-Y5JA_1M.se.sorted.deduped.${i}.tin.xls | tr -s \"\\w\" \"\\t\" | grep -P \"\\t${i}\\t\";"; done | singularity run 'docker://bicf/rseqc3.0:2.0.0' parallel -j `nproc` -k > Q-Y5JA_1M.se.sorted.deduped.tin.xls
   - pytest -m inferMetadata
 
 integration_se: