Merge branch '47-move.inference' into 'develop'
Resolve "Move inference to start of pipeline" Closes #47 See merge request !28
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- .gitlab-ci.yml 35 additions, 14 deletions.gitlab-ci.yml
- README.md 11 additions, 10 deletionsREADME.md
- docs/dag.png 0 additions, 0 deletionsdocs/dag.png
- workflow/conf/aws_ondemand.config 3 additions, 25 deletionsworkflow/conf/aws_ondemand.config
- workflow/conf/aws_spot.config 2 additions, 24 deletionsworkflow/conf/aws_spot.config
- workflow/conf/biohpc.config 24 additions, 9 deletionsworkflow/conf/biohpc.config
- workflow/nextflow.config 19 additions, 7 deletionsworkflow/nextflow.config
- workflow/rna-seq.nf 417 additions, 169 deletionsworkflow/rna-seq.nf
- workflow/scripts/parseMeta.py 2 additions, 6 deletionsworkflow/scripts/parseMeta.py
- workflow/tests/test_dataQC.py 14 additions, 0 deletionsworkflow/tests/test_dataQC.py
- workflow/tests/test_downsampleData.py 13 additions, 0 deletionsworkflow/tests/test_downsampleData.py
- workflow/tests/test_inferMetadata.py 1 addition, 1 deletionworkflow/tests/test_inferMetadata.py
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