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Created with Raphaël 2.2.030Nov20191413121110931Oct20Sep14131211109131Aug2726252420191615141312111087654331Jul3023151420May13116542130Apr27252422732130Mar2726242321201918161514131298628Feb18171514121110743230Jan29282724232221201918171514136311Dec9325Nov2015141186431OctTest CI unit uploadInputBagTest CI unit uploadInputBagFix CI unit uploadInputBagFix CI unit uploadInputBagFix CI unit uploadInputBagFix CI unit uploadInputBagFix CI unit uploadInputBagChange uploadInputBag unit test to use new singularity containerFix CI lintStart CI unit test for uploadInputBagAdd uploadInputBagMerge branch '68-outputBagDetails' into 'develop'Add Jons Syntax FixChange it all backFix RID in singularityFixed RIDGervaise made me do it againGervaise made me do itAdd run details to output bagMerge branch '65-trim_galore' into 'develop'update dag.Spell correction.Update use of includeInputs.Update changes to reflect only the change in order of steps. Fix output files.Fix extra space.Remove pigz parllel option.Update with set for since only 1 variable. Also update pattern to pass files.Add back parallel trim step. Moved fastqc step after trim.Update bicf_logo.pngMerge branch '78-tool_version' into developMerge branch '60-consistency_tests' into 'develop'Fix id in generate versions.Fix number of reads that map. Merge branch '78-tool_version' of git.biohpc.swmed.edu:gudmap_rbk/rna-seq into 78-tool_versionAddress typo's and refernces to pipeline.Fix custom report names for orderingTry to get software references workingFix spelling errorTest software version/references multiqc custom report orderingMerge branch 'develop' into '60-consistency_tests'