Commits · accde9b761f916abda88ce0bcb6dc6b6f973a4b0 · GUDMAP_RBK / RNA-seq

Sep 13, 2020
- Update deriva and python containers in config · accde9b7
  Gervaise Henry authored 4 years ago
  
  accde9b7
- Add datahub fetch for pipeline · 6ff4315b
  Gervaise Henry authored 4 years ago
  
  6ff4315b
- Update ref unit test for datahub · 45b7f679
  Gervaise Henry authored 4 years ago
  
  45b7f679
- Split grep from pipe from python · df0f368b
  Gervaise Henry authored 4 years ago
  
  df0f368b
Sep 12, 2020
- Fix extractRefData arg · 17df0fa5
  Gervaise Henry authored 4 years ago
  
  17df0fa5
Sep 11, 2020
- Change datahub ref ci form get to ls · 0883570c
  Gervaise Henry authored 4 years ago
  
  0883570c
- Use new gudmaprbk dockerhub deriva1.3 for ref unit · 160b314c
  Gervaise Henry authored 4 years ago
  
  160b314c
Sep 10, 2020
- Update .gitlab-ci.yml · 166616ec
  Venkat Malladi authored 4 years ago
  
  166616ec
- Update .gitlab-ci.yml · 6dc46c16
  Venkat Malladi authored 4 years ago
  
  6dc46c16
- Fix version · 2d08f484
  Venkat Malladi authored 4 years ago
  
  2d08f484
- Load another package · dc04540a
  Venkat Malladi authored 4 years ago
  
  dc04540a
- Update Pytest version · 300fc060
  Venkat Malladi authored 4 years ago
  
  300fc060
- Remove conda env · 73e52340
  Venkat Malladi authored 4 years ago
  
  73e52340
- Add --no-dep to conda create · 864c1f98
  Gervaise Henry authored 4 years ago
  
  864c1f98
- Fix CI lint and replicate env in hu test · fcf86055
  Gervaise Henry authored 4 years ago
  
  fcf86055
- Create deriva python env in ci until deriva1.3 docker image available · e84a5f04
  Gervaise Henry authored 4 years ago
  
  e84a5f04
Sep 09, 2020
- Link deriva auth cookie for datahub get ref · 0737fb67
  Gervaise Henry authored 4 years ago
  
  0737fb67
- Add extractRefData.py · 80718c06
  Gervaise Henry authored 4 years ago
  
  80718c06
- Fix CI lint · 00983e2b
  Gervaise Henry authored 4 years ago
  
  00983e2b
- Put getRef in CI stage and add get from datahub · 97cd5936
  Gervaise Henry authored 4 years ago
  
  97cd5936
- Add param for ref source · 45593829
  Gervaise Henry authored 4 years ago
  
  45593829
Sep 01, 2020
- Merge branch 'cherry-pick-927e3ba6' into 'develop' · 60452a9c
  Gervaise Henry authored 4 years ago
```
Add started time to multiqc #77

See merge request !44
```
  60452a9c
Aug 31, 2020
- Add started time to multiqc #77 · 6bc7f30f
  Gervaise Henry authored 4 years ago
```
(cherry picked from commit 927e3ba6)
```
  6bc7f30f
Aug 27, 2020
- Update CHANGELOG.md, workflow/nextflow.config files · 698ec0c7
  Gervaise Henry authored 4 years ago
  
  698ec0c7
- Update .gitlab-ci.yml · 770a16cf
  Gervaise Henry authored 4 years ago
  
  770a16cf
- Update .gitlab-ci.yml · f4965121
  Gervaise Henry authored 4 years ago
  
  f4965121
- Update .gitlab-ci.yml · 99a28790
  Gervaise Henry authored 4 years ago
  
  99a28790
- Update .gitlab-ci.yml · 8b341c8a
  Gervaise Henry authored 4 years ago
  
  8b341c8a
- Update .gitlab-ci.yml · 14886d2a
  Gervaise Henry authored 4 years ago
  
  14886d2a
- Update .gitlab-ci.yml · 3e0d7cc0
  Gervaise Henry authored 4 years ago
  
  3e0d7cc0
- Update .gitlab-ci.yml · b1e860c5
  Gervaise Henry authored 4 years ago
  
  b1e860c5
- Update .gitlab-ci.yml · c39bba41
  Gervaise Henry authored 4 years ago
  
  c39bba41
- Update .gitlab-ci.yml · 6c277421
  Gervaise Henry authored 4 years ago
  
  6c277421
- Merge branch '0.0.3' into 'develop' · d14cdf77
  Venkat Malladi authored 4 years ago
```
0.0.3

Closes #74, #73, #72, #71, and #61

See merge request !42
```
  d14cdf77
Aug 26, 2020
- Spellcheck changelog · 1bfecd57
  Gervaise Henry authored 4 years ago
  
  1bfecd57
- Fix CI lint · 6e4aea82
  Gervaise Henry authored 4 years ago
  
  6e4aea82
- Specify when to run CI tests #76 · 7d699ed3
  Gervaise Henry authored 4 years ago
  
  7d699ed3
- Update docs/dag.png · f67e2e38
  Gervaise Henry authored 4 years ago
  
  f67e2e38
- Add species override · 03e05d4c
  Gervaise Henry authored 4 years ago
  
  03e05d4c
Aug 25, 2020
- Re-add multiqc html report to integration artifacts · 8b56bdc5
  Gervaise Henry authored 4 years ago
  
  8b56bdc5