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Commit 160b314c authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Use new gudmaprbk dockerhub deriva1.3 for ref unit

parent 166616ec
Branches
Tags 0.1.0
2 merge requests!58Develop,!45Resolve "Move references to GUDMAP/RBK"
Pipeline #8121 passed with stages
in 47 minutes and 48 seconds
......@@ -240,7 +240,7 @@ humanDataHub:
- query=$(echo 'https://'${referenceBase}'/ermrest/catalog/2/entity/RNASeq:Reference_Genome/Reference_Version='${GRCv}'.'${GRCp}'/Annotation_Version=GENCODE%20'${GENCODE})
- curl --request GET ${query} > refQuery.json
- refURL=$(python ./workflow/scripts/extractRefData.py)
- deriva-hatrac-cli --host ${referenceBase} get ${refURL}
- singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host ${referenceBase} get ${refURL}
mousenDataHub:
stage: reference
......@@ -262,7 +262,7 @@ mousenDataHub:
- curl --request GET ${query} > refQuery.json
- refURL=$(python ./workflow/scripts/extractRefData.py)
- pip install --user deriva==1.3.0
- deriva-hatrac-cli --host ${referenceBase} get ${refURL}
- singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host ${referenceBase} get ${refURL}
integration_se:
......
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