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Commit 166616ec authored by Venkat Malladi's avatar Venkat Malladi
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Update .gitlab-ci.yml

parent 6dc46c16
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2 merge requests!58Develop,!45Resolve "Move references to GUDMAP/RBK"
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before_script:
- module load python/3.6.4-anaconda
- pip install --user attrs==19.1.0 pytest-pythonpath==0.7.1 pytest-cov==2.5.1
- pip install --user attrs==19.1.0 pytest-pythonpath==0.7.1 pytest-cov==2.5.1 deriva==1.3.0
- module load singularity/3.5.3
- module load nextflow/20.01.0
- ln -sfn /project/BICF/BICF_Core/shared/gudmap/test_data/* ./test_data/
......@@ -240,7 +240,6 @@ humanDataHub:
- query=$(echo 'https://'${referenceBase}'/ermrest/catalog/2/entity/RNASeq:Reference_Genome/Reference_Version='${GRCv}'.'${GRCp}'/Annotation_Version=GENCODE%20'${GENCODE})
- curl --request GET ${query} > refQuery.json
- refURL=$(python ./workflow/scripts/extractRefData.py)
- pip install --user deriva==1.3.0
- deriva-hatrac-cli --host ${referenceBase} get ${refURL}
mousenDataHub:
......
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