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Commit 864c1f98 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Add --no-dep to conda create

parent fcf86055
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2 merge requests!58Develop,!45Resolve "Move references to GUDMAP/RBK"
Pipeline #8104 failed with stages
in 2 minutes and 32 seconds
before_script:
- module add python/3.6.4-anaconda
- module load python/3.6.4-anaconda
- pip install --user pytest-pythonpath==0.7.1 pytest-cov==2.5.1
- module load singularity/3.5.3
- module load nextflow/20.01.0
......@@ -240,7 +240,7 @@ humanDataHub:
- query=$(echo 'https://'${referenceBase}'/ermrest/catalog/2/entity/RNASeq:Reference_Genome/Reference_Version='${GRCv}'.'${GRCp}'/Annotation_Version=GENCODE%20'${GENCODE})
- curl --request GET ${query} > refQuery.json
- refURL=$(python ./workflow/scripts/extractRefData.py)
- conda create --name deriva1.3 python=3.6 -y
- conda create --name deriva1.3 python=3.6 -y --no-deps
- source activate deriva1.3
- pip install deriva==1.3.0 --user
- deriva-hatrac-cli --host ${referenceBase} get ${refURL}
......@@ -264,7 +264,7 @@ mousenDataHub:
- query=$(echo 'https://'${referenceBase}'/ermrest/catalog/2/entity/RNASeq:Reference_Genome/Reference_Version='${GRCv}'.'${GRCp}'/Annotation_Version=GENCODE%20'${GENCODE})
- curl --request GET ${query} > refQuery.json
- refURL=$(python ./workflow/scripts/extractRefData.py)
- conda create --name deriva1.3 python=3.6 -y
- conda create --name deriva1.3 python=3.6 -y --no-deps
- source activate deriva1.3
- pip install deriva==1.3.0 --user
- deriva-hatrac-cli --host ${referenceBase} get ${refURL}
......
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