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Created with Raphaël 2.2.04Jan330Dec292827171475230Nov20191413121110931Oct20Sep14131211109131Aug2726252420191615141312111087654331Jul3023151420May13116542130Apr27252422732130Mar2726242321201918161514131298Fix fail lintFix fail if lintUpdate the pipeline error formatFix fail execution run conditionFix fail execution run conditionMake separate process for failing execution runFix bash int if comparison for fastq number checkTry and fix error finalize execution runTry and fix error finalize execution runTry and fix error finalize execution runAdd check for number of fastqsUpdate test execution run rid for ciUpdate test execution run rid for ciUpdate upload test params for ciUse non spike for CI ref testsUpdate references in CIGive split study full path to credentialsUpdate test data creation ref locationUpdate split study bash scriptUpdate split study py script nameUpdate test data creationUpdate gtf fna location in ciUpdate bed location in ciUpdate ref versions for ciFix tin by chromosomeUpdate changelogUpdate changelogAdd finalize execution run and add new references using bagUpload se and pe staging integration ci testsMerge branch '89-badges' into 'develop'Remove dev flag for integration testsUpdate default running valuesChange all integration tests to use stagingReplace only master dev tag for badge ciChange color of count badgesRemove extra badge build stepAdd badges for replicate countsFix R version fetch for badgeUpdate badge locations for readmeRemove redundant badges subfolder