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GUDMAP_RBK
RNA-seq
Commits
1bfecd57
Commit
1bfecd57
authored
4 years ago
by
Gervaise Henry
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Spellcheck changelog
parent
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0.0.3
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CHANGELOG.md
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1bfecd57
...
...
@@ -3,9 +3,9 @@
*
TPM table:
*
Add Ensembl Gene ID
*
Rename columns:
*GENCODE_Gene_Symbol*
,
*Ensembl_GeneID*
,
*NCBI_GeneID*
*
MultiQC output custom ta
l
bes (html+JSON):
*
MultiQC output custom tab
l
es (html+JSON):
*
Run table:
*Session ID*
and
*Pipeline Version*
*
Reference Table:
*Species*
,
*Genome Reference Consortium Build*
,
*Genome Reference Consortium Patch*
,
*GENCODE Annotation Release*
(ouputs both human and mouse versions)
*
Reference Table:
*Species*
,
*Genome Reference Consortium Build*
,
*Genome Reference Consortium Patch*
,
*GENCODE Annotation Release*
(ou
t
puts both human and mouse versions)
*
Add inputBag override param (
`inputBagForce`
) [
`*.zip`
]
*
Uses provided inputBag instead of downloading from data-hub
*
Still requires matching repRID input param
...
...
@@ -14,7 +14,7 @@
*
Still requires matching repRID input param and will pull inputBag from data-hub to access submitted metadata for reporting
*
Add species override param (
`speciesForce`
) [
`Mus musculus`
or
`Homo sapiens`
]
*
forces the use of the provided species
*
ignors infered ambiguous species
*
ignor
e
s infer
r
ed ambiguous species
**Background**
*
Add GeneSymbol/EnsemblID/EntrezID translation files to references
...
...
@@ -22,7 +22,7 @@
*Known Bugs*
*
outputBag does not contain fetch for processed data
*
Does not include automatic data upload
*
Override params (inputBag, fastq, species) are't checked for integrity
*
Override params (inputBag, fastq, species) are
n
't checked for integrity
<hr>
...
...
@@ -47,4 +47,4 @@
**INITIAL BETA VERSION**
\
Does not include automatic data upload
\
This version is for initial upload of test data to GUDMAP/RBK data-hub for internal integration
<hr>
<hr>
\ No newline at end of file
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