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Commit 1bfecd57 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Spellcheck changelog

parent 6e4aea82
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2 merge requests!43Develop,!420.0.3
Pipeline #9752 failed with stage
in 1 minute and 42 seconds
...@@ -3,9 +3,9 @@ ...@@ -3,9 +3,9 @@
* TPM table: * TPM table:
* Add Ensembl Gene ID * Add Ensembl Gene ID
* Rename columns: *GENCODE_Gene_Symbol*, *Ensembl_GeneID*, *NCBI_GeneID* * Rename columns: *GENCODE_Gene_Symbol*, *Ensembl_GeneID*, *NCBI_GeneID*
* MultiQC output custom talbes (html+JSON): * MultiQC output custom tables (html+JSON):
* Run table: *Session ID* and *Pipeline Version* * Run table: *Session ID* and *Pipeline Version*
* Reference Table: *Species*, *Genome Reference Consortium Build*, *Genome Reference Consortium Patch*, *GENCODE Annotation Release* (ouputs both human and mouse versions) * Reference Table: *Species*, *Genome Reference Consortium Build*, *Genome Reference Consortium Patch*, *GENCODE Annotation Release* (outputs both human and mouse versions)
* Add inputBag override param (`inputBagForce`) [`*.zip`] * Add inputBag override param (`inputBagForce`) [`*.zip`]
* Uses provided inputBag instead of downloading from data-hub * Uses provided inputBag instead of downloading from data-hub
* Still requires matching repRID input param * Still requires matching repRID input param
...@@ -14,7 +14,7 @@ ...@@ -14,7 +14,7 @@
* Still requires matching repRID input param and will pull inputBag from data-hub to access submitted metadata for reporting * Still requires matching repRID input param and will pull inputBag from data-hub to access submitted metadata for reporting
* Add species override param (`speciesForce`) [`Mus musculus` or `Homo sapiens`] * Add species override param (`speciesForce`) [`Mus musculus` or `Homo sapiens`]
* forces the use of the provided species * forces the use of the provided species
* ignors infered ambiguous species * ignores inferred ambiguous species
**Background** **Background**
* Add GeneSymbol/EnsemblID/EntrezID translation files to references * Add GeneSymbol/EnsemblID/EntrezID translation files to references
...@@ -22,7 +22,7 @@ ...@@ -22,7 +22,7 @@
*Known Bugs* *Known Bugs*
* outputBag does not contain fetch for processed data * outputBag does not contain fetch for processed data
* Does not include automatic data upload * Does not include automatic data upload
* Override params (inputBag, fastq, species) are't checked for integrity * Override params (inputBag, fastq, species) aren't checked for integrity
<hr> <hr>
...@@ -47,4 +47,4 @@ ...@@ -47,4 +47,4 @@
**INITIAL BETA VERSION**\ **INITIAL BETA VERSION**\
Does not include automatic data upload\ Does not include automatic data upload\
This version is for initial upload of test data to GUDMAP/RBK data-hub for internal integration This version is for initial upload of test data to GUDMAP/RBK data-hub for internal integration
<hr> <hr>
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