Commits · 96fc2b7191bdc9c481c548871d3901d6cc0a3cc7 · GUDMAP_RBK / RNA-seq

Apr 13, 2021
- Fix fetch fastq count · 96fc2b71
  Gervaise Henry authored 4 years ago
  
  96fc2b71
Mar 20, 2021
- Finalize pre release · 50b56cab
  Gervaise Henry authored 4 years ago
  
  50b56cab
Mar 19, 2021
- Finalize aws env ci + docs · 09bd8e2b
  Gervaise Henry authored 4 years ago
  
  09bd8e2b
Mar 08, 2021
- Update changelog · e3366771
  Gervaise Henry authored 4 years ago
  
  e3366771
- Create untested badges for env if not tested · a3a43a5d
  Gervaise Henry authored 4 years ago
  
  a3a43a5d
Mar 03, 2021
- Change ci fail ambiguous species to species error · bb8b6af8
  Gervaise Henry authored 4 years ago
  
  bb8b6af8
Mar 02, 2021
- Only singularity pull 5 containers at a time · c59b5eb4
  Gervaise Henry authored 4 years ago
  
  c59b5eb4
- Add seqtk to references · 36caf093
  Gervaise Henry authored 4 years ago
  
  36caf093
- Add ends override · d3e19ff3
  Gervaise Henry authored 4 years ago
  
  d3e19ff3
- Don't donwload fastqs if overridden · 1e8d161e
  Gervaise Henry authored 4 years ago
  
  1e8d161e
- Update changelog · 30abfb69
  Gervaise Henry authored 4 years ago
  
  30abfb69
Feb 23, 2021
- Use datahub as source for integration_se ci · 3ce1ddf7
  Gervaise Henry authored 4 years ago
  
  3ce1ddf7
Feb 19, 2021
- Update CHANGELOG · 4d3cbbc9
  Gervaise Henry authored 4 years ago
  
  4d3cbbc9
- Utilize seq type inference from seqwho · 3c5f30fb
  Gervaise Henry authored 4 years ago
  
  3c5f30fb
Feb 04, 2021
- Update changelog · 5056f2a6
  Gervaise Henry authored 4 years ago
  
  5056f2a6
Jan 28, 2021
- Update version to 2.0.0rc01 · 6961db25
  Gervaise Henry authored 4 years ago
  
  6961db25
Jan 26, 2021
- Add new py tests for integration and override · ecd4e76f
  Gervaise Henry authored 4 years ago
  
  ecd4e76f
- Add force params for stranded and spike · 59cb654a
  Gervaise Henry authored 4 years ago
  
  59cb654a
Jan 25, 2021
- Change logic for uploadOutputBag · a503d1e2
  Gervaise Henry authored 4 years ago
  
  a503d1e2
- Merge data error pre-Execution run · 77410b76
  Gervaise Henry authored 4 years ago
  
  77410b76
- Add blank mRNA_QC on data fail · f4e88555
  Gervaise Henry authored 4 years ago
  
  f4e88555
- Convert strandedness from yes/no to t/f · b9798355
  Gervaise Henry authored 4 years ago
  
  b9798355
- Update Has_Strand_Specific_Information to Strandedness · 3b3b7891
  Gervaise Henry authored 4 years ago
  
  3b3b7891
- Update Sequencing_Type to Experiment_Type · a5aedff5
  Gervaise Henry authored 4 years ago
  
  a5aedff5
- Allow Single Read for backwards compatibility · ca8d3a9c
  Gervaise Henry authored 4 years ago
  
  ca8d3a9c
Jan 20, 2021
- Update changelog · 5011fa37
  Gervaise Henry authored 4 years ago
  
  5011fa37
- Change Single Read to Single End · 797354e0
  Gervaise Henry authored 4 years ago
  
  797354e0
- Update errors in readme · ef06aea5
  Gervaise Henry authored 4 years ago
  
  ef06aea5
- Use 1 less process for samtools threading and limit memto 75% of available · 1fe7d8b3
  Gervaise Henry authored 4 years ago
  
  1fe7d8b3
- Make sampled align use > 32GB nodes on BioHPC · 9e121dac
  Gervaise Henry authored 4 years ago
  
  9e121dac
Jan 19, 2021
- Detect malformed fastqs · f7559c64
  Gervaise Henry authored 4 years ago
  
  f7559c64
- Don't parse manual ends from file.csv anymore · 6b6268c3
  Gervaise Henry authored 4 years ago
  
  6b6268c3
- Handle blank endness better · 41f6e91a
  Gervaise Henry authored 4 years ago
  
  41f6e91a
- Remove redundant check for multiple fastqs in parse metadata · 538a5074
  Gervaise Henry authored 4 years ago
  
  538a5074
- Allow .R[1,2] and _R[1,2] fastqs · 56d35250
  Gervaise Henry authored 4 years ago
  
  56d35250
- Filter input bag export config to only get fastq's matching convention · 5d9c691f
  Gervaise Henry authored 4 years ago
  
  5d9c691f
- Only used fastq's named correctly · d78689ad
  Gervaise Henry authored 4 years ago
  
  d78689ad
- Update changelog · 1f07208d
  Gervaise Henry authored 4 years ago
  
  1f07208d
- Allow unexpected values for stranded/spike/species · 8a91ad1b
  Gervaise Henry authored 4 years ago
  
  8a91ad1b
- Update changelog · f4d642f5
  Gervaise Henry authored 4 years ago
  
  f4d642f5