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Commit 538a5074 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Remove redundant check for multiple fastqs in parse metadata

parent 56d35250
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2 merge requests!65Develop,!64Resolve "samtools sort: couldn't allocate memory for bam_mem"
......@@ -9,6 +9,7 @@
* Only use fastq's that match *[_.]R[1-2].fastq.gz naming convention (#107)
* Add error output for no fastq's
* Update input bag export config to only fetch fastq's that match *[_.]R[1-2].fastq.gz naming convention
* Remove check for multiple fastq check in parse metadata (redundant and no longer valid)
*Known Bugs*
* Override params (inputBag, fastq, species) aren't checked for integrity
......
......@@ -35,10 +35,6 @@ def main():
else:
rep = metaFile["Replicate_RID"].unique()[0]
print(rep)
if (len(metaFile[metaFile["File_Type"] == "FastQ"]) > 2):
print("There are more then 2 fastq's in the metadata: " +
" ".join(metaFile[metaFile["File_Type"] == "FastQ"].RID))
exit(1)
# Check experiment RID metadata from 'Experiment.csv'
if (args.parameter == "expRID"):
......
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