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Commit 3b3b7891 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Update Has_Strand_Specific_Information to Strandedness

parent a5aedff5
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2 merge requests!68Develop,!67Resolve "Change Single Read to Single End for submitted endness"
Pipeline #9101 passed with stages
in 5 minutes and 48 seconds
......@@ -17,6 +17,7 @@
* Restrict sampled alignment process to use >32GB nodes on BioHPC (#108)
* Use nproc**-1** for alignment processes (#108)
* Data-hub column title change from "Sequencing_Type" to "Experiment_Type" (#114)
* Data-hub column title change from "Has_Strand_Specific_Information" to "Strandedness" (#115)
*Known Bugs*
* Override params (inputBag, fastq, species) aren't checked for integrity
......
......@@ -40,7 +40,7 @@
"processor": "csv",
"processor_params": {
"output_path": "Experiment Settings",
"query_path": "/attribute/M:=RNASeq:Replicate/RID={rid}/(Experiment_RID)=(RNASeq:Experiment_Settings:Experiment_RID)/RID,Experiment_RID,Alignment_Format,Aligner,Aligner_Version,Reference_Genome,Sequence_Trimming,Duplicate_Removal,Pre-alignment_Sequence_Removal,Junction_Reads,Library_Type,Protocol_Reference,Library_Selection,Quantification_Format,Quantification_Software,Expression_Metric,Transcriptome_Model,Sequencing_Platform,Paired_End,Read_Length,Has_Strand_Specific_Information,Used_Spike_Ins,Spike_Ins_Amount,Visualization_Format,Visualization_Software,Visualization_Version,Visualization_Setting,Notes,RCT,RMT?limit=none"
"query_path": "/attribute/M:=RNASeq:Replicate/RID={rid}/(Experiment_RID)=(RNASeq:Experiment_Settings:Experiment_RID)/RID,Experiment_RID,Alignment_Format,Aligner,Aligner_Version,Reference_Genome,Sequence_Trimming,Duplicate_Removal,Pre-alignment_Sequence_Removal,Junction_Reads,Library_Type,Protocol_Reference,Library_Selection,Quantification_Format,Quantification_Software,Expression_Metric,Transcriptome_Model,Sequencing_Platform,Paired_End,Read_Length,Strandedness,Used_Spike_Ins,Spike_Ins_Amount,Visualization_Format,Visualization_Software,Visualization_Version,Visualization_Setting,Notes,RCT,RMT?limit=none"
}
},
{
......
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