diff --git a/CHANGELOG.md b/CHANGELOG.md index c95af4e7cf553c61ef2bef5911cc6c58679f09f4..637e6d9146d8d9e0904825f96b3af22f8b72d717 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -17,6 +17,7 @@ * Restrict sampled alignment process to use >32GB nodes on BioHPC (#108) * Use nproc**-1** for alignment processes (#108) * Data-hub column title change from "Sequencing_Type" to "Experiment_Type" (#114) +* Data-hub column title change from "Has_Strand_Specific_Information" to "Strandedness" (#115) *Known Bugs* * Override params (inputBag, fastq, species) aren't checked for integrity diff --git a/workflow/conf/Replicate_For_Input_Bag.json b/workflow/conf/Replicate_For_Input_Bag.json index 907ad8823c7b5853568cabd9c95955d6de95e4d9..508a0245051534fae39020792719b04d78947613 100644 --- a/workflow/conf/Replicate_For_Input_Bag.json +++ b/workflow/conf/Replicate_For_Input_Bag.json @@ -40,7 +40,7 @@ "processor": "csv", "processor_params": { "output_path": "Experiment Settings", - "query_path": "/attribute/M:=RNASeq:Replicate/RID={rid}/(Experiment_RID)=(RNASeq:Experiment_Settings:Experiment_RID)/RID,Experiment_RID,Alignment_Format,Aligner,Aligner_Version,Reference_Genome,Sequence_Trimming,Duplicate_Removal,Pre-alignment_Sequence_Removal,Junction_Reads,Library_Type,Protocol_Reference,Library_Selection,Quantification_Format,Quantification_Software,Expression_Metric,Transcriptome_Model,Sequencing_Platform,Paired_End,Read_Length,Has_Strand_Specific_Information,Used_Spike_Ins,Spike_Ins_Amount,Visualization_Format,Visualization_Software,Visualization_Version,Visualization_Setting,Notes,RCT,RMT?limit=none" + "query_path": "/attribute/M:=RNASeq:Replicate/RID={rid}/(Experiment_RID)=(RNASeq:Experiment_Settings:Experiment_RID)/RID,Experiment_RID,Alignment_Format,Aligner,Aligner_Version,Reference_Genome,Sequence_Trimming,Duplicate_Removal,Pre-alignment_Sequence_Removal,Junction_Reads,Library_Type,Protocol_Reference,Library_Selection,Quantification_Format,Quantification_Software,Expression_Metric,Transcriptome_Model,Sequencing_Platform,Paired_End,Read_Length,Strandedness,Used_Spike_Ins,Spike_Ins_Amount,Visualization_Format,Visualization_Software,Visualization_Version,Visualization_Setting,Notes,RCT,RMT?limit=none" } }, {