From 3b3b7891d58ecf57a0619ef3534da9b7df124b80 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 25 Jan 2021 12:14:04 -0600
Subject: [PATCH] Update Has_Strand_Specific_Information to Strandedness
---
CHANGELOG.md | 1 +
workflow/conf/Replicate_For_Input_Bag.json | 2 +-
2 files changed, 2 insertions(+), 1 deletion(-)
diff --git a/CHANGELOG.md b/CHANGELOG.md
index c95af4e..637e6d9 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -17,6 +17,7 @@
* Restrict sampled alignment process to use >32GB nodes on BioHPC (#108)
* Use nproc**-1** for alignment processes (#108)
* Data-hub column title change from "Sequencing_Type" to "Experiment_Type" (#114)
+* Data-hub column title change from "Has_Strand_Specific_Information" to "Strandedness" (#115)
*Known Bugs*
* Override params (inputBag, fastq, species) aren't checked for integrity
diff --git a/workflow/conf/Replicate_For_Input_Bag.json b/workflow/conf/Replicate_For_Input_Bag.json
index 907ad88..508a024 100644
--- a/workflow/conf/Replicate_For_Input_Bag.json
+++ b/workflow/conf/Replicate_For_Input_Bag.json
@@ -40,7 +40,7 @@
"processor": "csv",
"processor_params": {
"output_path": "Experiment Settings",
- "query_path": "/attribute/M:=RNASeq:Replicate/RID={rid}/(Experiment_RID)=(RNASeq:Experiment_Settings:Experiment_RID)/RID,Experiment_RID,Alignment_Format,Aligner,Aligner_Version,Reference_Genome,Sequence_Trimming,Duplicate_Removal,Pre-alignment_Sequence_Removal,Junction_Reads,Library_Type,Protocol_Reference,Library_Selection,Quantification_Format,Quantification_Software,Expression_Metric,Transcriptome_Model,Sequencing_Platform,Paired_End,Read_Length,Has_Strand_Specific_Information,Used_Spike_Ins,Spike_Ins_Amount,Visualization_Format,Visualization_Software,Visualization_Version,Visualization_Setting,Notes,RCT,RMT?limit=none"
+ "query_path": "/attribute/M:=RNASeq:Replicate/RID={rid}/(Experiment_RID)=(RNASeq:Experiment_Settings:Experiment_RID)/RID,Experiment_RID,Alignment_Format,Aligner,Aligner_Version,Reference_Genome,Sequence_Trimming,Duplicate_Removal,Pre-alignment_Sequence_Removal,Junction_Reads,Library_Type,Protocol_Reference,Library_Selection,Quantification_Format,Quantification_Software,Expression_Metric,Transcriptome_Model,Sequencing_Platform,Paired_End,Read_Length,Strandedness,Used_Spike_Ins,Spike_Ins_Amount,Visualization_Format,Visualization_Software,Visualization_Version,Visualization_Setting,Notes,RCT,RMT?limit=none"
}
},
{
--
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