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GUDMAP_RBK
RNA-seq
Commits
a3a43a5d
Commit
a3a43a5d
authored
4 years ago
by
Gervaise Henry
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Create untested badges for env if not tested
parent
31ee1c24
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!76
Develop
,
!75
Env.ci
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#9505
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in 50 minutes and 23 seconds
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CHANGELOG.md
+1
-0
1 addition, 0 deletions
CHANGELOG.md
workflow/scripts/get_updated_badge_info.sh
+19
-1
19 additions, 1 deletion
workflow/scripts/get_updated_badge_info.sh
with
20 additions
and
1 deletion
CHANGELOG.md
+
1
−
0
View file @
a3a43a5d
...
...
@@ -34,6 +34,7 @@
*
Don't download fastq's if fastq override present
*
Override fastq count to override counts
*
Change ambiguous species ci to wrong species
*
Add test for DNAnexus env
*Known Bugs*
*
Override params (inputBag, fastq, species) aren't checked for integrity
...
...
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workflow/scripts/get_updated_badge_info.sh
+
19
−
1
View file @
a3a43a5d
...
...
@@ -50,4 +50,22 @@ curl --request GET https://img.shields.io/badge/R%20Version-${r_version}-bluevio
curl
--request
GET https://img.shields.io/badge/FastQC%20Version-
${
fastqc_version
}
-blueviolet
?style
=
flat
>
./badges/tools/fastqc.svg
curl
--request
GET https://img.shields.io/badge/SeqWho%20Version-
${
seqwho_version
}
-blueviolet
?style
=
flat
>
./badges/tools/seqwho.svg
curl
--request
GET https://img.shields.io/badge/RSeQC%20Version-
${
rseqc_version
}
-blueviolet
?style
=
flat
>
./badges/tools/rseqc.svg
curl
--request
GET https://img.shields.io/badge/MultiQC%20Version-
${
multiqc_version
}
-blueviolet
?style
=
flat
>
./badges/tools/multiqc.svg
\ No newline at end of file
curl
--request
GET https://img.shields.io/badge/MultiQC%20Version-
${
multiqc_version
}
-blueviolet
?style
=
flat
>
./badges/tools/multiqc.svg
echo
"creating blank env badges if not tested"
if
[
!
-f
./badges/env/dnanexus.svg
]
then
curl
--request
GET https://img.shields.io/badge/Envronment%3A%20DNAnexus-not%2Dtested-important?style
=
flat
>
./badges/env/dnanexus.svg
fi
if
[
!
-f
./badges/env/aws.svg
]
then
curl
--request
GET https://img.shields.io/badge/Envronment%3A%20AWS-not%2Dtested-important?style
=
flat
>
./badges/env/aws.svg
fi
if
[
!
-f
./badges/env/azure.svg
]
then
curl
--request
GET https://img.shields.io/badge/Envronment%3A%20Azure-not%2Dtested-important?style
=
flat
>
./badges/env/azure.svg
fi
if
[
!
-f
./badges/env/gcp.svg
]
then
curl
--request
GET https://img.shields.io/badge/Envronment%3A%20GCP-not%2Dtested-important?style
=
flat
>
./badges/env/gcp.svg
fi
\ No newline at end of file
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