Change ci fail ambiguous species to species error

.gitlab-ci.yml

@@ -807,7 +807,7 @@ integration_pe:
       - always
 
 
-failAmbiguousSpecies:
+failSpecies:
   stage: integration
   only: [merge_requests]
   except:
@@ -816,7 +816,7 @@ failAmbiguousSpecies:
   script:
     - hostname
     - ulimit -a
-    - nextflow -q run ./rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5ER --source staging --upload true -with-dag dag.png --dev false --ci true --track true -with-report ./failAmbiguousSpecies_report.html
+    - nextflow -q run ./rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5F4 --source staging --inputBagForce ./test_data/bag/wrongSpecies/Q-Y5F6_inputBag_xxxxxxxx.zip --upload true -with-dag dag.png --dev false --ci true --track false -with-report ./failSpecies_report.html
   retry:
     max: 0
     when:

CHANGELOG.md

@@ -33,6 +33,7 @@
 * Make compatible with XPACK-DNANEXUS
 * Don't download fastq's if fastq override present
 * Override fastq count to override counts
+* Change ambiguous species ci to wrong species
 
 *Known Bugs*
 * Override params (inputBag, fastq, species) aren't checked for integrity
@@ -40,6 +41,8 @@
 * Check for outputBag in hatrac doesn't check for any uploaded by chaise
 * CI container cache will fail if cache folder is not owned by CI runner user
 * CI container cache will not error if container failed to pull
+* CI (container cache, version collection, and unit tests) will not work correctly if containers reffered to in nextflow.config aren't prefixed perfectly with: "container = "
+  * also, it is assumed that the containers are on dockerhub and don't have the "docker://" prefix
 
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