Commits · 8995bdbd74ceeedd946fa468239bf41fa9b2ce78 · GUDMAP_RBK / RNA-seq

Jul 22, 2021
- Add nodefaults to all inserts calls with deriva.core · 8995bdbd
  Gervaise Henry authored 3 years ago
  
  8995bdbd
- Add license info to nextflow file · e85e165e
  Gervaise Henry authored 3 years ago
  
  e85e165e
- Add license info to pR scripts · 8028c2d2
  Gervaise Henry authored 3 years ago
  
  8028c2d2
- Add license info to python scripts · 27d31ee7
  Gervaise Henry authored 3 years ago
  
  27d31ee7
- Merge branch '133-ci.test.rids' into 'develop' · c9c308a8
  Venkat Malladi authored 3 years ago
```
Resolve "Change the CI unit test RIDs"

Closes #133

See merge request !91
```
  c9c308a8
Jul 21, 2021
- Remove fail integration CI tests · bc8e1a9e
  Gervaise Henry authored 3 years ago
  
  bc8e1a9e
- Update changelog · 6a95ab82
  Gervaise Henry authored 3 years ago
  
  6a95ab82
- Use CI variables for getBag CI · 0d23777e
  Gervaise Henry authored 3 years ago
  
  0d23777e
- Fix -u in uploadOutputBag CI · c1c185da
  Gervaise Henry authored 3 years ago
  
  c1c185da
- Temporarily add -u to uploadOutputBag CI · eb32e8de
  Gervaise Henry authored 3 years ago
  
  eb32e8de
- Use CI variables for uploadOutputBag CI · ed7637aa
  Gervaise Henry authored 3 years ago
  
  ed7637aa
- Fix uploadProcessedFiles CI exists · 933fe186
  Gervaise Henry authored 3 years ago
  
  933fe186
- Use CI variables for uploadProcessedFiles CI · 3e0130a4
  Gervaise Henry authored 3 years ago
  
  3e0130a4
- Fix uploadExecutionRun and uploadQC CI exist · 984d0810
  Gervaise Henry authored 3 years ago
  
  984d0810
- Use CI variables for uploadQC CI · d0448f31
  Gervaise Henry authored 3 years ago
  
  d0448f31
- Use CI variables for uploadExecutionRun CI · 1f06bc2b
  Gervaise Henry authored 3 years ago
  
  1f06bc2b
- Remove CI proxy export · 10655e42
  Gervaise Henry authored 3 years ago
  
  10655e42
- Add UTSW proxy into ci before · 4b8e4d03
  Gervaise Henry authored 3 years ago
  
  4b8e4d03
Jul 19, 2021
- Merge branch '132-bdbag' into 'develop' · 29f90cdf
  Gervaise Henry authored 3 years ago
```
Reimplimented symbolic link of bdbag cookie.

Closes #132

See merge request !90
```
  29f90cdf
Jul 16, 2021
- Merge branch '125-infered' into 'develop' · 8ba4e7b2
  Gervaise Henry authored 3 years ago
```
Changed the spelling of inferred.

Closes #125

See merge request !89
```
  8ba4e7b2
- Fix caps stragglers · 8ee49ad3
  Venkat Malladi authored 3 years ago
  
  8ee49ad3
- Fix caps. · 072003d4
  Venkat Malladi authored 3 years ago
  
  072003d4
- clear out any lines. · 198b3a7e
  Venkat Malladi authored 3 years ago
  
  198b3a7e
- Reimplimented symbolic link of bdbag cookie. · c35fd5ba
  Venkat Malladi authored 3 years ago
  
  c35fd5ba
- Changed the spelling of inferred. · 21a1b44a
  Venkat Malladi authored 3 years ago
  
  21a1b44a
Jul 05, 2021
- Merge branch '129-Fix_FastQ_Error' into 'develop' · bb1e0848
  Gervaise Henry authored 3 years ago
```
Update rna-seq.nf

Closes #129

See merge request !88
```
  bb1e0848
- Reverted version in nextflow.config to '2.0.0' · 64fa9678
  Jon Gesell authored 3 years ago
  
  64fa9678
- Corrected missing escape character. · 5b271a2e
  Jon Gesell authored 3 years ago
  
  5b271a2e
- Updated CHANGELOG.md and nexflot.config version numbers to 2.x.x_indev · 303f7ade
  Jon Gesell authored 3 years ago
  
  303f7ade
- Updated to include changes with issue #129 · de6a8665
  Jonathan Gesell authored 3 years ago
  
  de6a8665
- Update rna-seq.nf · 03fdde8f
  Jon Gesell authored 3 years ago
```
Changed the requested line in the scripts section of rna-seq.nf
```
  03fdde8f
May 06, 2021
- Add container for new process · 9690aab3
  Gervaise Henry authored 3 years ago
  
  9690aab3
- Add new process to configs · 8d80de50
  Gervaise Henry authored 3 years ago
  
  8d80de50
- Fix new pre fail · 5c11e089
  Gervaise Henry authored 3 years ago
  
  5c11e089
- Add new fail pre ex run for seqwho · e5783b29
  Gervaise Henry authored 3 years ago
  
  e5783b29
- Change spike from infer to meta for uploadExecutionRun · aaac13e4
  Gervaise Henry authored 3 years ago
  
  aaac13e4
Apr 22, 2021
- Fix fail pre ex run dependency on infferd meta · a35b8fe2
  Gervaise Henry authored 3 years ago
  
  a35b8fe2
Apr 20, 2021
- Fix seqwho errors · f9f3d1ea
  Gervaise Henry authored 3 years ago
  
  f9f3d1ea
Apr 13, 2021
- Fix failPreExecutionRun error collection · c0e6c659
  Gervaise Henry authored 3 years ago
  
  c0e6c659
- Fix fetch fastq count · 96fc2b71
  Gervaise Henry authored 3 years ago
  
  96fc2b71