Add license info to python scripts

workflow/scripts/delete_entry.py

+#!/usr/bin/env python3
+#delete_entry.py
+#*
+#* --------------------------------------------------------------------------
+#* Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/14a1c222e53f59391d96a2a2e1fd4995474c0d15/LICENSE)
+#* --------------------------------------------------------------------------
+#*
+
 import argparse
 from deriva.core import ErmrestCatalog, get_credential, BaseCLI
 import sys
@@ -34,4 +42,4 @@ if __name__ == '__main__':
     cli.remove_options(["--config-file"])
     host = args.host
     credentials = {"cookie": args.cookie}
-    main(host, 2, credentials)
\ No newline at end of file
+    main(host, 2, credentials)

workflow/scripts/extract_ref_data.py

 #!/usr/bin/env python3
+#extract_ref_data.py
+#*
+#* --------------------------------------------------------------------------
+#* Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/14a1c222e53f59391d96a2a2e1fd4995474c0d15/LICENSE)
+#* --------------------------------------------------------------------------
+#*
 
 import argparse
 import pandas as pd

workflow/scripts/generate_references.py

@@ -2,7 +2,7 @@
 #generate_references.py
 #*
 #* --------------------------------------------------------------------------
-#* Licensed under MIT (https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count/blob/develop/LICENSE)
+#* Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/14a1c222e53f59391d96a2a2e1fd4995474c0d15/LICENSE)
 #* --------------------------------------------------------------------------
 #*
 

workflow/scripts/generate_versions.py

 #!/usr/bin/env python3
-# -*- coding: utf-8 -*-
-
-#
-# * --------------------------------------------------------------------------
-# * Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/master/LICENSE)
-# * --------------------------------------------------------------------------
-#
+#generate_versions.py
+#*
+#* --------------------------------------------------------------------------
+#* Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/14a1c222e53f59391d96a2a2e1fd4995474c0d15/LICENSE)
+#* --------------------------------------------------------------------------
+#*
 
 '''Make YAML of software versions.'''
 

workflow/scripts/parse_meta.py

 #!/usr/bin/env python3
+#parse_meta.py
+#*
+#* --------------------------------------------------------------------------
+#* Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/14a1c222e53f59391d96a2a2e1fd4995474c0d15/LICENSE)
+#* --------------------------------------------------------------------------
+#*
 
 import argparse
 import pandas as pd

workflow/scripts/tin_hist.py

 #!/usr/bin/env python3
+#tin_hist.py
+#*
+#* --------------------------------------------------------------------------
+#* Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/14a1c222e53f59391d96a2a2e1fd4995474c0d15/LICENSE)
+#* --------------------------------------------------------------------------
+#*
 
 import argparse
 import pandas as pd

workflow/scripts/upload_execution_run.py

+#!/usr/bin/env python3
+#upload_execution_run.py
+#*
+#* --------------------------------------------------------------------------
+#* Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/14a1c222e53f59391d96a2a2e1fd4995474c0d15/LICENSE)
+#* --------------------------------------------------------------------------
+#*
+
 import argparse
 from deriva.core import ErmrestCatalog, get_credential, BaseCLI
 import sys
@@ -58,4 +66,4 @@ if __name__ == '__main__':
     cli.remove_options(["--config-file"])
     host = args.host
     credentials = {"cookie": args.cookie}
-    main(host, 2, credentials)
\ No newline at end of file
+    main(host, 2, credentials)

workflow/scripts/upload_input_bag.py

+#!/usr/bin/env python3
+#upload_input_bag.py
+#*
+#* --------------------------------------------------------------------------
+#* Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/14a1c222e53f59391d96a2a2e1fd4995474c0d15/LICENSE)
+#* --------------------------------------------------------------------------
+#*
+
 import argparse
 from deriva.core import ErmrestCatalog, get_credential, BaseCLI
 import sys
@@ -43,4 +51,4 @@ if __name__ == '__main__':
     cli.remove_options(["--config-file"])
     host = args.host
     credential = {"cookie": args.cookie}
-    main(host, 2, credential)
\ No newline at end of file
+    main(host, 2, credential)

workflow/scripts/upload_output_bag.py

+#!/usr/bin/env python3
+#upload_output_bag.py
+#*
+#* --------------------------------------------------------------------------
+#* Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/14a1c222e53f59391d96a2a2e1fd4995474c0d15/LICENSE)
+#* --------------------------------------------------------------------------
+#*
+
 import argparse
 from deriva.core import ErmrestCatalog, get_credential, BaseCLI
 import sys
@@ -54,4 +62,4 @@ if __name__ == '__main__':
     cli.remove_options(["--config-file"])
     host = args.host
     credential = {"cookie": args.cookie}
-    main(host, 2, credential)
\ No newline at end of file
+    main(host, 2, credential)

workflow/scripts/upload_qc.py

+#!/usr/bin/env python3
+#upload_qc.py
+#*
+#* --------------------------------------------------------------------------
+#* Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/14a1c222e53f59391d96a2a2e1fd4995474c0d15/LICENSE)
+#* --------------------------------------------------------------------------
+#*
+
 import argparse
 from deriva.core import ErmrestCatalog, get_credential, BaseCLI
 import sys
@@ -72,4 +80,4 @@ if __name__ == '__main__':
     cli.remove_options(["--config-file"])
     host = args.host
     credentials = {"cookie": args.cookie}
-    main(host, 2, credentials)
\ No newline at end of file
+    main(host, 2, credentials)

workflow/scripts/utils.py

 #!/usr/bin/env python3
+#utils.py
+#*
+#* --------------------------------------------------------------------------
+#* Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/14a1c222e53f59391d96a2a2e1fd4995474c0d15/LICENSE)
+#* --------------------------------------------------------------------------
+#*
 
 import shlex
 import logging