From 27d31ee7506b8bf31310a68df17cf31da89e601c Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 22 Jul 2021 13:18:11 -0500
Subject: [PATCH] Add license info to python scripts

---
 workflow/scripts/delete_entry.py         | 10 +++++++++-
 workflow/scripts/extract_ref_data.py     |  6 ++++++
 workflow/scripts/generate_references.py  |  2 +-
 workflow/scripts/generate_versions.py    | 13 ++++++-------
 workflow/scripts/parse_meta.py           |  6 ++++++
 workflow/scripts/tin_hist.py             |  6 ++++++
 workflow/scripts/upload_execution_run.py | 10 +++++++++-
 workflow/scripts/upload_input_bag.py     | 10 +++++++++-
 workflow/scripts/upload_output_bag.py    | 10 +++++++++-
 workflow/scripts/upload_qc.py            | 10 +++++++++-
 workflow/scripts/utils.py                |  6 ++++++
 11 files changed, 76 insertions(+), 13 deletions(-)

diff --git a/workflow/scripts/delete_entry.py b/workflow/scripts/delete_entry.py
index 1b26509..77207e8 100644
--- a/workflow/scripts/delete_entry.py
+++ b/workflow/scripts/delete_entry.py
@@ -1,3 +1,11 @@
+#!/usr/bin/env python3
+#delete_entry.py
+#*
+#* --------------------------------------------------------------------------
+#* Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/14a1c222e53f59391d96a2a2e1fd4995474c0d15/LICENSE)
+#* --------------------------------------------------------------------------
+#*
+
 import argparse
 from deriva.core import ErmrestCatalog, get_credential, BaseCLI
 import sys
@@ -34,4 +42,4 @@ if __name__ == '__main__':
     cli.remove_options(["--config-file"])
     host = args.host
     credentials = {"cookie": args.cookie}
-    main(host, 2, credentials)
\ No newline at end of file
+    main(host, 2, credentials)
diff --git a/workflow/scripts/extract_ref_data.py b/workflow/scripts/extract_ref_data.py
index bf06c95..87fc1e0 100644
--- a/workflow/scripts/extract_ref_data.py
+++ b/workflow/scripts/extract_ref_data.py
@@ -1,4 +1,10 @@
 #!/usr/bin/env python3
+#extract_ref_data.py
+#*
+#* --------------------------------------------------------------------------
+#* Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/14a1c222e53f59391d96a2a2e1fd4995474c0d15/LICENSE)
+#* --------------------------------------------------------------------------
+#*
 
 import argparse
 import pandas as pd
diff --git a/workflow/scripts/generate_references.py b/workflow/scripts/generate_references.py
index 8e809f1..d72b352 100644
--- a/workflow/scripts/generate_references.py
+++ b/workflow/scripts/generate_references.py
@@ -2,7 +2,7 @@
 #generate_references.py
 #*
 #* --------------------------------------------------------------------------
-#* Licensed under MIT (https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count/blob/develop/LICENSE)
+#* Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/14a1c222e53f59391d96a2a2e1fd4995474c0d15/LICENSE)
 #* --------------------------------------------------------------------------
 #*
 
diff --git a/workflow/scripts/generate_versions.py b/workflow/scripts/generate_versions.py
index 2ff4986..1ee1683 100644
--- a/workflow/scripts/generate_versions.py
+++ b/workflow/scripts/generate_versions.py
@@ -1,11 +1,10 @@
 #!/usr/bin/env python3
-# -*- coding: utf-8 -*-
-
-#
-# * --------------------------------------------------------------------------
-# * Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/master/LICENSE)
-# * --------------------------------------------------------------------------
-#
+#generate_versions.py
+#*
+#* --------------------------------------------------------------------------
+#* Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/14a1c222e53f59391d96a2a2e1fd4995474c0d15/LICENSE)
+#* --------------------------------------------------------------------------
+#*
 
 '''Make YAML of software versions.'''
 
diff --git a/workflow/scripts/parse_meta.py b/workflow/scripts/parse_meta.py
index 52f0f18..64f9e55 100644
--- a/workflow/scripts/parse_meta.py
+++ b/workflow/scripts/parse_meta.py
@@ -1,4 +1,10 @@
 #!/usr/bin/env python3
+#parse_meta.py
+#*
+#* --------------------------------------------------------------------------
+#* Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/14a1c222e53f59391d96a2a2e1fd4995474c0d15/LICENSE)
+#* --------------------------------------------------------------------------
+#*
 
 import argparse
 import pandas as pd
diff --git a/workflow/scripts/tin_hist.py b/workflow/scripts/tin_hist.py
index ee36bb6..599f285 100644
--- a/workflow/scripts/tin_hist.py
+++ b/workflow/scripts/tin_hist.py
@@ -1,4 +1,10 @@
 #!/usr/bin/env python3
+#tin_hist.py
+#*
+#* --------------------------------------------------------------------------
+#* Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/14a1c222e53f59391d96a2a2e1fd4995474c0d15/LICENSE)
+#* --------------------------------------------------------------------------
+#*
 
 import argparse
 import pandas as pd
diff --git a/workflow/scripts/upload_execution_run.py b/workflow/scripts/upload_execution_run.py
index 405c81a..5fd0cf4 100644
--- a/workflow/scripts/upload_execution_run.py
+++ b/workflow/scripts/upload_execution_run.py
@@ -1,3 +1,11 @@
+#!/usr/bin/env python3
+#upload_execution_run.py
+#*
+#* --------------------------------------------------------------------------
+#* Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/14a1c222e53f59391d96a2a2e1fd4995474c0d15/LICENSE)
+#* --------------------------------------------------------------------------
+#*
+
 import argparse
 from deriva.core import ErmrestCatalog, get_credential, BaseCLI
 import sys
@@ -58,4 +66,4 @@ if __name__ == '__main__':
     cli.remove_options(["--config-file"])
     host = args.host
     credentials = {"cookie": args.cookie}
-    main(host, 2, credentials)
\ No newline at end of file
+    main(host, 2, credentials)
diff --git a/workflow/scripts/upload_input_bag.py b/workflow/scripts/upload_input_bag.py
index ab4d338..434129d 100644
--- a/workflow/scripts/upload_input_bag.py
+++ b/workflow/scripts/upload_input_bag.py
@@ -1,3 +1,11 @@
+#!/usr/bin/env python3
+#upload_input_bag.py
+#*
+#* --------------------------------------------------------------------------
+#* Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/14a1c222e53f59391d96a2a2e1fd4995474c0d15/LICENSE)
+#* --------------------------------------------------------------------------
+#*
+
 import argparse
 from deriva.core import ErmrestCatalog, get_credential, BaseCLI
 import sys
@@ -43,4 +51,4 @@ if __name__ == '__main__':
     cli.remove_options(["--config-file"])
     host = args.host
     credential = {"cookie": args.cookie}
-    main(host, 2, credential)
\ No newline at end of file
+    main(host, 2, credential)
diff --git a/workflow/scripts/upload_output_bag.py b/workflow/scripts/upload_output_bag.py
index e1e1fc1..a4ac630 100644
--- a/workflow/scripts/upload_output_bag.py
+++ b/workflow/scripts/upload_output_bag.py
@@ -1,3 +1,11 @@
+#!/usr/bin/env python3
+#upload_output_bag.py
+#*
+#* --------------------------------------------------------------------------
+#* Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/14a1c222e53f59391d96a2a2e1fd4995474c0d15/LICENSE)
+#* --------------------------------------------------------------------------
+#*
+
 import argparse
 from deriva.core import ErmrestCatalog, get_credential, BaseCLI
 import sys
@@ -54,4 +62,4 @@ if __name__ == '__main__':
     cli.remove_options(["--config-file"])
     host = args.host
     credential = {"cookie": args.cookie}
-    main(host, 2, credential)
\ No newline at end of file
+    main(host, 2, credential)
diff --git a/workflow/scripts/upload_qc.py b/workflow/scripts/upload_qc.py
index 29fac06..3c51bc8 100644
--- a/workflow/scripts/upload_qc.py
+++ b/workflow/scripts/upload_qc.py
@@ -1,3 +1,11 @@
+#!/usr/bin/env python3
+#upload_qc.py
+#*
+#* --------------------------------------------------------------------------
+#* Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/14a1c222e53f59391d96a2a2e1fd4995474c0d15/LICENSE)
+#* --------------------------------------------------------------------------
+#*
+
 import argparse
 from deriva.core import ErmrestCatalog, get_credential, BaseCLI
 import sys
@@ -72,4 +80,4 @@ if __name__ == '__main__':
     cli.remove_options(["--config-file"])
     host = args.host
     credentials = {"cookie": args.cookie}
-    main(host, 2, credentials)
\ No newline at end of file
+    main(host, 2, credentials)
diff --git a/workflow/scripts/utils.py b/workflow/scripts/utils.py
index 548b84c..dc49b34 100644
--- a/workflow/scripts/utils.py
+++ b/workflow/scripts/utils.py
@@ -1,4 +1,10 @@
 #!/usr/bin/env python3
+#utils.py
+#*
+#* --------------------------------------------------------------------------
+#* Licensed under MIT (https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/-/blob/14a1c222e53f59391d96a2a2e1fd4995474c0d15/LICENSE)
+#* --------------------------------------------------------------------------
+#*
 
 import shlex
 import logging
-- 
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