Merge branch '129-Fix_FastQ_Error' into 'develop'

Update rna-seq.nf

Closes #129

See merge request !88

CHANGELOG.md

+# v.2.x.x (indev)
+**User Facing**
+
+**Background**
+* Corrected file search parameters due to name inconsistency (#129)
+
 # v2.0.0
 **User Facing**
 * Endness metadata "Single Read" changed to "Single End" in data-hub, pipeline updated to handle (#110) ("Single Read" still acceptable for backwards compatibility)

rna-seq.nf

@@ -634,7 +634,7 @@ process fastqc {
     # run fastqc
     echo -e "LOG: running fastq on raw fastqs" >> ${repRID}.fastqc.log
     fastqc *.fastq.gz -o . &> fastqc.out || true
-    fastqcErrorOut=\$(cat fastqc.out | grep -c 'Failed to process file') || fastqcErrorOut=0
+    fastqcErrorOut=\$(cat fastqc.out | grep -c 'Failed to process') || fastqcErrorOut=0
     fastqFileError=false
     fastqFileError_details=""
     if [ "\${fastqcErrorOut}" -ne "0" ]