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Commit d0448f31 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Use CI variables for uploadQC CI

parent 1f06bc2b
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2 merge requests!95Update rna-seq.nf,!91Resolve "Change the CI unit test RIDs"
Pipeline #10490 failed with stages
in 10 minutes and 45 seconds
......@@ -489,7 +489,7 @@ uploadQC:
done
echo all old mRNA QC RIDs deleted
fi
rid=$(singularity run ${dir}${derivaImg}_${derivaVar}.sif python3 ./workflow/scripts/upload_qc.py -r 17-BTFJ -e 17-BVDJ -p "Single End" -s forward -l 35 -w 5 -f 1 -t 1 -n "This is a test mRNA QC" -o staging.gudmap.org -c ${cookie} -u F)
rid=$(singularity run ${dir}${derivaImg}_${derivaVar}.sif python3 ./workflow/scripts/upload_qc.py -r ${ci_staging_rid_test_rep} -e ${ci_staging_rid_test_erun} -p "Single End" -s forward -l 35 -w 5 -f 1 -t 1 -n "This is a test mRNA QC" -o staging.gudmap.org -c ${cookie} -u F)
echo ${rid} test mRNA QC created
uploadProcessedFile:
......
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