From d0448f316b0b60260c5f82219fc93968bae23d63 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Wed, 21 Jul 2021 17:17:38 -0500
Subject: [PATCH] Use CI variables for uploadQC CI
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 13e548d..4ae188a 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -489,7 +489,7 @@ uploadQC:
done
echo all old mRNA QC RIDs deleted
fi
- rid=$(singularity run ${dir}${derivaImg}_${derivaVar}.sif python3 ./workflow/scripts/upload_qc.py -r 17-BTFJ -e 17-BVDJ -p "Single End" -s forward -l 35 -w 5 -f 1 -t 1 -n "This is a test mRNA QC" -o staging.gudmap.org -c ${cookie} -u F)
+ rid=$(singularity run ${dir}${derivaImg}_${derivaVar}.sif python3 ./workflow/scripts/upload_qc.py -r ${ci_staging_rid_test_rep} -e ${ci_staging_rid_test_erun} -p "Single End" -s forward -l 35 -w 5 -f 1 -t 1 -n "This is a test mRNA QC" -o staging.gudmap.org -c ${cookie} -u F)
echo ${rid} test mRNA QC created
uploadProcessedFile:
--
GitLab