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GUDMAP_RBK
RNA-seq
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198b3a7e
Commit
198b3a7e
authored
3 years ago
by
Venkat Malladi
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!95
Update rna-seq.nf
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!90
Reimplimented symbolic link of bdbag cookie.
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198b3a7e
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@@ -206,7 +206,7 @@ process getBag {
mkdir -p ~/.deriva
ln -sf `readlink -e credential.json` ~/.deriva/credential.json
echo -e "LOG: linked" >> ${repRID}.getBag.log
# deriva-download replicate RID
echo -e "LOG: fetching bag for ${repRID} in GUDMAP" >> ${repRID}.getBag.log
deriva-download-cli ${source} --catalog 2 ${replicateExportConfig} . rid=${repRID}
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