diff --git a/rna-seq.nf b/rna-seq.nf index 3b950ec1ac8e7316bd8defe528f3e0996a6a3902..05632c941854238a92cdd79ba7c02a097deb2950 100644 --- a/rna-seq.nf +++ b/rna-seq.nf @@ -206,7 +206,7 @@ process getBag { mkdir -p ~/.deriva ln -sf `readlink -e credential.json` ~/.deriva/credential.json echo -e "LOG: linked" >> ${repRID}.getBag.log - + # deriva-download replicate RID echo -e "LOG: fetching bag for ${repRID} in GUDMAP" >> ${repRID}.getBag.log deriva-download-cli ${source} --catalog 2 ${replicateExportConfig} . rid=${repRID}