Commit bc8e1a9e authored by Gervaise Henry's avatar Gervaise Henry 🤠
Browse files

Remove fail integration CI tests

parent 6a95ab82
Pipeline #10501 passed with stages
in 209 minutes and 59 seconds
......@@ -810,81 +810,6 @@ integration_pe:
- always
failTrunkation:
stage: integration
only: [merge_requests]
except:
variables:
- $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/
script:
- hostname
- ulimit -a
- nextflow -q run ./rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5ET --source staging --upload true -with-dag dag.png --dev false --ci true --track true -with-report ./failTrunkation_report.html
retry:
max: 0
when:
- always
failMismatchR1R2:
stage: integration
only: [merge_requests]
except:
variables:
- $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/
script:
- hostname
- ulimit -a
- nextflow -q run ./rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 16-CWH4 --source staging --upload true -with-dag dag.png --dev false --ci true --track true -with-report ./failMismatchR1R2_report.html
retry:
max: 0
when:
- always
failUnexpectedMeta:
stage: integration
only: [merge_requests]
except:
variables:
- $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/
script:
- hostname
- ulimit -a
- nextflow -q run ./rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 14-3R4R --source staging --upload true -with-dag dag.png --dev false --ci true --track true -with-report ./failUnexpectedMeta_report.html
retry:
max: 0
when:
- always
failFileStructure:
stage: integration
only: [merge_requests]
except:
variables:
- $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/
script:
- hostname
- ulimit -a
- nextflow -q run ./rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5HT --source staging --upload true -with-dag dag.png --dev false --ci true --track true -with-report ./failFileStructure_report.html
retry:
max: 0
when:
- always
failSeqType:
stage: integration
only: [merge_requests]
except:
variables:
- $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/
script:
- hostname
- ulimit -a
- nextflow -q run ./rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 16-DNDJ --source staging --upload true -with-dag dag.png --dev false --ci true --track true -with-report ./failSeqType_report.html
retry:
max: 0
when:
- always
override_inputBag:
stage: integration
only: [merge_requests]
......
......@@ -8,6 +8,7 @@
* Add CI variables for staging RIDs (#133)
* Use CI staging RIDs for CI unit tests: getBag, uploadInputBag, uploadExecutionRun, uploadQC, uploadProcessedFiles, uploadOutputBag (#133)
* Add `-u "F"` to CI unit test uploadOutputBag `upload_output_bag.py`
* Remove "fail" integration CI tests (#133 addendum)
# v2.0.0
**User Facing**
......
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