diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index d5dcb8b160e4bf8968651cbfac7ff1d029cd528c..4519e674866692619c2439246a2430c2d305acf5 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -810,81 +810,6 @@ integration_pe: - always -failTrunkation: - stage: integration - only: [merge_requests] - except: - variables: - - $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/ - script: - - hostname - - ulimit -a - - nextflow -q run ./rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5ET --source staging --upload true -with-dag dag.png --dev false --ci true --track true -with-report ./failTrunkation_report.html - retry: - max: 0 - when: - - always - -failMismatchR1R2: - stage: integration - only: [merge_requests] - except: - variables: - - $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/ - script: - - hostname - - ulimit -a - - nextflow -q run ./rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 16-CWH4 --source staging --upload true -with-dag dag.png --dev false --ci true --track true -with-report ./failMismatchR1R2_report.html - retry: - max: 0 - when: - - always - -failUnexpectedMeta: - stage: integration - only: [merge_requests] - except: - variables: - - $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/ - script: - - hostname - - ulimit -a - - nextflow -q run ./rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 14-3R4R --source staging --upload true -with-dag dag.png --dev false --ci true --track true -with-report ./failUnexpectedMeta_report.html - retry: - max: 0 - when: - - always - -failFileStructure: - stage: integration - only: [merge_requests] - except: - variables: - - $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/ - script: - - hostname - - ulimit -a - - nextflow -q run ./rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5HT --source staging --upload true -with-dag dag.png --dev false --ci true --track true -with-report ./failFileStructure_report.html - retry: - max: 0 - when: - - always - -failSeqType: - stage: integration - only: [merge_requests] - except: - variables: - - $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/ - script: - - hostname - - ulimit -a - - nextflow -q run ./rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 16-DNDJ --source staging --upload true -with-dag dag.png --dev false --ci true --track true -with-report ./failSeqType_report.html - retry: - max: 0 - when: - - always - override_inputBag: stage: integration only: [merge_requests] diff --git a/CHANGELOG.md b/CHANGELOG.md index 209c2e64995793404ceea419a6c6fe7d7d533047..68623b759d1166b3addaf58d1624142230e0ee40 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -8,6 +8,7 @@ * Add CI variables for staging RIDs (#133) * Use CI staging RIDs for CI unit tests: getBag, uploadInputBag, uploadExecutionRun, uploadQC, uploadProcessedFiles, uploadOutputBag (#133) * Add `-u "F"` to CI unit test uploadOutputBag `upload_output_bag.py` +* Remove "fail" integration CI tests (#133 addendum) # v2.0.0 **User Facing**