From bc8e1a9e3a89d4d7ee627c8da1487294dc236fee Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Wed, 21 Jul 2021 20:56:51 -0500
Subject: [PATCH] Remove fail integration CI tests
---
.gitlab-ci.yml | 75 --------------------------------------------------
CHANGELOG.md | 1 +
2 files changed, 1 insertion(+), 75 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index d5dcb8b..4519e67 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -810,81 +810,6 @@ integration_pe:
- always
-failTrunkation:
- stage: integration
- only: [merge_requests]
- except:
- variables:
- - $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/
- script:
- - hostname
- - ulimit -a
- - nextflow -q run ./rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5ET --source staging --upload true -with-dag dag.png --dev false --ci true --track true -with-report ./failTrunkation_report.html
- retry:
- max: 0
- when:
- - always
-
-failMismatchR1R2:
- stage: integration
- only: [merge_requests]
- except:
- variables:
- - $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/
- script:
- - hostname
- - ulimit -a
- - nextflow -q run ./rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 16-CWH4 --source staging --upload true -with-dag dag.png --dev false --ci true --track true -with-report ./failMismatchR1R2_report.html
- retry:
- max: 0
- when:
- - always
-
-failUnexpectedMeta:
- stage: integration
- only: [merge_requests]
- except:
- variables:
- - $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/
- script:
- - hostname
- - ulimit -a
- - nextflow -q run ./rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 14-3R4R --source staging --upload true -with-dag dag.png --dev false --ci true --track true -with-report ./failUnexpectedMeta_report.html
- retry:
- max: 0
- when:
- - always
-
-failFileStructure:
- stage: integration
- only: [merge_requests]
- except:
- variables:
- - $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/
- script:
- - hostname
- - ulimit -a
- - nextflow -q run ./rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5HT --source staging --upload true -with-dag dag.png --dev false --ci true --track true -with-report ./failFileStructure_report.html
- retry:
- max: 0
- when:
- - always
-
-failSeqType:
- stage: integration
- only: [merge_requests]
- except:
- variables:
- - $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/
- script:
- - hostname
- - ulimit -a
- - nextflow -q run ./rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 16-DNDJ --source staging --upload true -with-dag dag.png --dev false --ci true --track true -with-report ./failSeqType_report.html
- retry:
- max: 0
- when:
- - always
-
override_inputBag:
stage: integration
only: [merge_requests]
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 209c2e6..68623b7 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -8,6 +8,7 @@
* Add CI variables for staging RIDs (#133)
* Use CI staging RIDs for CI unit tests: getBag, uploadInputBag, uploadExecutionRun, uploadQC, uploadProcessedFiles, uploadOutputBag (#133)
* Add `-u "F"` to CI unit test uploadOutputBag `upload_output_bag.py`
+* Remove "fail" integration CI tests (#133 addendum)
# v2.0.0
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--
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