Commits · c066be2dd53ab92fca3948c850ccff4358c0c8d0 · BICF / Astrocyte / cellranger_mkfastq

Jul 31, 2019
- Merge branch '26-v3.1.0' into 'develop' · c066be2d
  Gervaise Henry authored 5 years ago
```
Resolve "Change to cellranger v 3.1.0"

Closes #26 and #27

See merge request !42
```
  c066be2d
- update paths · 1474eb3e
  Jeremy Mathews authored 5 years ago
  
  1474eb3e
- change paths to astrocyte output · c159bf79
  Jeremy Mathews authored 5 years ago
  
  c159bf79
- update paths in artifacts · df3cceba
  Jeremy Mathews authored 5 years ago
  
  df3cceba
- add multiqc report to CI artifacts · 33da86ef
  Jeremy Mathews authored 5 years ago
  
  33da86ef
- Update Cellranger to version 3.1.0 · 5b73fc02
  Jeremy Mathews authored 5 years ago
  
  5b73fc02
Jul 24, 2019
- Update CHANGELOG.md · 151db2cf
  Gervaise Henry authored 5 years ago
  
  151db2cf
Jul 23, 2019
- Update .gitlab-ci.yml · 2a53502c
  Gervaise Henry authored 5 years ago
  
  2a53502c
Jul 22, 2019
- Update CHANGELOG.md · 71b3464e
  Gervaise Henry authored 5 years ago
  
  71b3464e
- Merge branch '25-AddPytestCI' into 'develop' · a20066fe
  Gervaise Henry authored 5 years ago
```
Resolve "Add pytest to CI"

Closes #25

See merge request !40
```
  a20066fe
- restructre pytests · 8ebc05b9
  Jeremy Mathews authored 5 years ago
  
  8ebc05b9
- remove wildcards from all paths · 6dd85b3e
  Jeremy Mathews authored 5 years ago
  
  6dd85b3e
- hardcode check design test · 908ca9d8
  Jeremy Mathews authored 5 years ago
  
  908ca9d8
- install pip · 42954333
  Jeremy Mathews authored 5 years ago
  
  42954333
- comment out design · f761cc15
  Jeremy Mathews authored 5 years ago
  
  f761cc15
- make literal · e981dbff
  Jeremy Mathews authored 5 years ago
  
  e981dbff
- design · d2faf5be
  Jeremy Mathews authored 5 years ago
  
  d2faf5be
- change test design · 267a4004
  Jeremy Mathews authored 5 years ago
  
  267a4004
- print test · 9472e0a1
  Jeremy Mathews authored 5 years ago
  
  9472e0a1
- fix output file check to astrocyte output · 3f7623d5
  Jeremy Mathews authored 5 years ago
  
  3f7623d5
- update output path check design test · 8e0a9468
  Jeremy Mathews authored 5 years ago
  
  8e0a9468
- Update test files · fef9d32e
  Jeremy Mathews authored 5 years ago
  
  fef9d32e
- Add tests for all sections of pipeline · 6955255a
  Jeremy Mathews authored 5 years ago
  
  6955255a
Jul 19, 2019
- fix syntax · 83688779
  Jeremy Mathews authored 5 years ago
  
  83688779
- Fix paths · 0c7feead
  Jeremy Mathews authored 5 years ago
  
  0c7feead
- Add pytest · 6cef4fe6
  Jeremy Mathews authored 5 years ago
  
  6cef4fe6
Jul 10, 2019
- Update README.md · b1e7748e
  Gervaise Henry authored 5 years ago
  
  b1e7748e
- Update CHANGELOG.md · bc191ed6
  Gervaise Henry authored 5 years ago
  
  bc191ed6
- Merge branch '24-CheckStyle' into 'develop' · ec49d090
  Gervaise Henry authored 5 years ago
```
fixed style

Closes #24

See merge request !39
```
  ec49d090
- fixed style · a830a0c9
  Holly Ruess authored 5 years ago
  
  a830a0c9
Jul 08, 2019
- Update CHANGELOG.md · 5a111ac2
  Gervaise Henry authored 5 years ago
  
  5a111ac2
- Minor formatting · 42ddd6e9
  Gervaise Henry authored 5 years ago
  
  42ddd6e9
- Merge branch '8-CountDesignFile' into 'develop' · 36f91741
  Gervaise Henry authored 5 years ago
```
Create Design file for count with 1 bcl input

Closes #8

See merge request !38
```
  36f91741
- Create Design file for count with 1 bcl input · 6dcc8372
  Jeremy Mathews authored 5 years ago
  
  6dcc8372
Jun 28, 2019
- Update CHANGELOG.md · 0131bd60
  Gervaise Henry authored 5 years ago
  
  0131bd60
- Update CHANGELOG.md · c8263c1f
  Gervaise Henry authored 5 years ago
  
  c8263c1f
- Add bicf logo and don't add multiqc raw data · 4d1f21d7
  Gervaise Henry authored 5 years ago
  
  4d1f21d7
- Change some formatting to match cellranger_count · 61515526
  Gervaise Henry authored 5 years ago
  
  61515526
Jun 26, 2019
- Update references.md · c4f7f5d3
  Gervaise Henry authored 5 years ago
  
  c4f7f5d3
- Update CHANGELOG.md · a58e00be
  Gervaise Henry authored 5 years ago
  
  a58e00be