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cellranger_mkfastq
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BICF
Astrocyte
cellranger_mkfastq
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c4f7f5d3
Commit
c4f7f5d3
authored
5 years ago
by
Gervaise Henry
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Update references.md
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1.
**python**
:
*
Anaconda (Anaconda Software Distribution,
[
https://anaconda.com
](
https://anaconda.com
)
)
2.
**pigz**
*
p
igz
[
https://zlib.net/pigz/
](
https://zlib.net/pigz/
)
2.
**pigz**
:
*
p
arallel implementation of gzip
[
https://zlib.net/pigz/
](
https://zlib.net/pigz/
)
3.
**
cellranger
**
*
Cellranger mk
fastq
[
https://support.
10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/mkfastq
](
https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/mkfastq
)
3.
**
bcl2fastq
**
:
*
Ilumina's bcl2
fastq
[
https://support.
illumina.com/sequencing/sequencing_software/bcl2fastq-conversion-software.html
](
https://support.illumina.com/sequencing/sequencing_software/bcl2fastq-conversion-software.html
)
4.
**fastqc**
3.
**cellranger**
:
*
10x Genomics cellranger mkfastq
[
https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/mkfastq
](
https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/mkfastq
)
4.
**fastqc**
:
*
fastqc
[
https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
](
https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
)
5.
**MultiQc**
:
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