Commit f761cc15 authored by Jeremy Mathews's avatar Jeremy Mathews

comment out design

parent e981dbff
Pipeline #4455 canceled with stages
in 1 minute and 36 seconds
......@@ -28,7 +28,7 @@ simple_1FC:
- tags
script:
- nextflow run workflow/main.nf --bcl "test_data/simple1/*.tar.gz" --designFile "test_data/simple1/cellranger-tiny-bcl-simple-1_2_0.csv"
- pytest -m design
# - pytest -m design
- pytest -m untarBCL
- pytest -m mkfastq
- pytest -m fastqc
......@@ -49,7 +49,7 @@ simple_2FC:
stage: simple
script:
- nextflow run workflow/main.nf --bcl "test_data/simple2/*.tar.gz" --designFile "test_data/simple2/cellranger-tiny-bcl-simple-1_2_0.csv"
- pytest -m design
# - pytest -m design
- pytest -m untarBCL
- pytest -m mkfastq
- pytest -m fastqc
......
......@@ -6,9 +6,9 @@ from io import StringIO
import os
test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
"/../output/misc/checkDesignFile/**/"
'/../output/misc/checkDesignFile/**/'
@pytest.mark.design
def test_design():
design_file = os.path.join(test_output_path, "design.checked.csv")
design_file = os.path.join(test_output_path, 'design.checked.csv')
assert os.path.exists(design_file)
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