Commit 0c7feead authored by Jeremy Mathews's avatar Jeremy Mathews

Fix paths

parent 6cef4fe6
Pipeline #4430 failed with stages
in 4 minutes and 54 seconds
......@@ -7,8 +7,10 @@ import os
import glob
test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
'/../../test/mkfastq/'
'/../../test/mkfastq/**/outs/fastq_path/**/**/'
@pytest.mark.fastqc
def test_fastqc_output():
assert os.path.exists(os.path.join(test_output_path, glob.glob('*.fastq.gz', recursive=True)))
fastqcs = glob.glob('/../../test/mkfastq/*/outs/fastq_path/*/*/*.fastq.gz', recursive=True)
for f in fastqcs
assert os.path.exists(os.path.join(test_output_path, f))
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