Commits · develop · BICF / Astrocyte / cellranger_count

20 Nov, 2020 8 commits
- Merge branch '56-5GEX' into 'develop' · 9efc4721
  Gervaise Henry authored Nov 20, 2020
```
Add new lib options to biohpc config

Closes #56

See merge request !81
```
  9efc4721
- Add new lib options to biohpc config · 82cc010f
  Gervaise Henry authored Nov 20, 2020
  
  82cc010f
- Merge branch '56-5GEX' into 'develop' · cadc1dea
  Gervaise Henry authored Nov 20, 2020
```
Resolve "Add 5GEXPE/SE as library options"

Closes #56

See merge request !80
```
  cadc1dea
- Change 5GEXSE to 5GEXR2 · 911127be
  Gervaise Henry authored Nov 20, 2020
  
  911127be
- Update README · 38909e89
  Gervaise Henry authored Nov 20, 2020
  
  38909e89
- Update CHANGELOG · 32ce68dc
  Gervaise Henry authored Nov 20, 2020
  
  32ce68dc
- Add library options to astrocyte yml · e5b53e04
  Gervaise Henry authored Nov 20, 2020
  
  e5b53e04
- Add all library options to main.nf · 79e40633
  Gervaise Henry authored Nov 20, 2020
  
  79e40633
03 Nov, 2020 1 commit
- Prep 3.0.0 indev · 70e3c6e4
  Gervaise Henry authored Nov 03, 2020
  
  70e3c6e4
15 Aug, 2020 1 commit
- Update CHANGELOG.md, workflow/main.nf, workflow/nextflow.config files · ee1d7b6d
  Gervaise Henry authored Aug 15, 2020
  
  ee1d7b6d
14 Aug, 2020 18 commits
- Add Jon to author list on Astrocyte #47 · 869bc7da
  Gervaise Henry authored Aug 14, 2020
  
  869bc7da
- Fix 2 sample CI genome param · c5a4362a
  Gervaise Henry authored Aug 14, 2020
  
  c5a4362a
- Merge branch '50-seurat.object' into 'develop' · 3944b9de
  Gervaise Henry authored Aug 14, 2020
```
Resolve "Generate Raw RDS file"

Closes #50

See merge request !76
```
  3944b9de
- Add Jon to license #47 · 436b0259
  Gervaise Henry authored Aug 14, 2020
  
  436b0259
- Remove container seurat test until container is fixed · d131ee9c
  Gervaise Henry authored Aug 14, 2020
  
  d131ee9c
- Update changelog · af278bb7
  Gervaise Henry authored Aug 14, 2020
  
  af278bb7
- Add seurat test data link fix to container test · 6772ee15
  Gervaise Henry authored Aug 14, 2020
  
  6772ee15
- Try sfn for seurat test data · e62bf327
  Gervaise Henry authored Aug 14, 2020
  
  e62bf327
- Quiet optparse install · 226e3b49
  Gervaise Henry authored Aug 14, 2020
  
  226e3b49
- Insatll optparse if not present · 1e4a5946
  Gervaise Henry authored Aug 14, 2020
  
  1e4a5946
- Fix CI · f3feba08
  Gervaise Henry authored Aug 14, 2020
  
  f3feba08
- Fix CI · 4bafd4ec
  Gervaise Henry authored Aug 14, 2020
  
  4bafd4ec
- Git module and container unit tests for seurat · 7599692c
  Gervaise Henry authored Aug 14, 2020
  
  7599692c
- Update configs · d262bb16
  Gervaise Henry authored Aug 14, 2020
  
  d262bb16
- Update readme for vizFiles param · cc90ce91
  Gervaise Henry authored Aug 14, 2020
  
  cc90ce91
- Only run downstreamViz on param · 4e3398c6
  Gervaise Henry authored Aug 14, 2020
  
  4e3398c6
- Change output of seurat objects · 3206a051
  Gervaise Henry authored Aug 14, 2020
  
  3206a051
- Add Seurat version to report and fix Seurat itteration · d907644c
  Gervaise Henry authored Aug 14, 2020
  
  d907644c
13 Aug, 2020 3 commits
- Add downstreamViz processes to configs · fd188a99
  Gervaise Henry authored Aug 13, 2020
  
  fd188a99
- Add downstreamViz (seurat) generation · ee609792
  Gervaise Henry authored Aug 13, 2020
  
  ee609792
- Merge branch 'cellranger-4.0.0_ref-2020A' into '50-seurat.object' · 83890557
  Gervaise Henry authored Aug 13, 2020
```
Cellranger 4.0.0 ref 2020 a

See merge request !75
```
  83890557
04 Aug, 2020 5 commits
- Fix module/container artifact paths · 60f343c4
  Gervaise Henry authored Aug 04, 2020
  
  60f343c4
- Remove periods from module/container unit test ids · 876a4c77
  Gervaise Henry authored Aug 04, 2020
  
  876a4c77
- Remove underscores from module/container unit test ids · f735a275
  Gervaise Henry authored Aug 04, 2020
  
  f735a275
- Indevidualize module/container unit test run names · 1b7e4147
  Gervaise Henry authored Aug 04, 2020
  
  1b7e4147
- Add split unit tests for modules and containers · 8e7ac5e9
  Gervaise Henry authored Aug 04, 2020
  
  8e7ac5e9
13 Jul, 2020 4 commits
- Finish fixing configs · 26460c2c
  Gervaise Henry authored Jul 13, 2020
  
  26460c2c
- Fix configs and refs · 51ff8a09
  Gervaise Henry authored Jul 13, 2020
  
  51ff8a09
- Fix configs · abd059b2
  Gervaise Henry authored Jul 13, 2020
  
  abd059b2
- Fix expectcells for 400 · dcaa3068
  Gervaise Henry authored Jul 13, 2020
  
  dcaa3068