Update readme for vizFiles param

README.md

@@ -108,12 +108,17 @@ To Run:
         * *'3.0.2'*
         * *'2.1.1'*
     * eg: **--version '3.1.0'**
+  * **--vizFiles**
+    * create objects which can be used for downstream visualization and analysis of each sample outputs, currently creates:
+      * Seurat R-objects
+    * true/false
+    * eg: **--version true**
   * **--outDir**
     * optional output directory for run
     * eg: **--outDir 'test'**
 * FULL EXAMPLE:
   ```
-  nextflow run workflow/main.nf -profile biohpc,cluster --fastq '/project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_count/hu.v3s2r10k/*.fastq.gz' --designFile '/project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_count/hu.v3s2r10k/design.csv' --genome 'GRCh38-3.0.0' --kitVersion '3GEXv3' --version '3.1.0' --outDir 'test'
+  nextflow run workflow/main.nf -profile biohpc,cluster --fastq '/project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_count/hu.v3s2r10k/*.fastq.gz' --designFile '/project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_count/hu.v3s2r10k/design.csv' --genome 'GRCh38-3.0.0' --kitVersion '3GEXv3' --version '3.1.0' --vizFiles true --outDir 'test'
   ```
 * Design example: