Commit 70e3c6e4 authored by Gervaise Henry's avatar Gervaise Henry 🤠
Browse files

Prep 3.0.0 indev

parent ee1d7b6d
Pipeline #8280 passed with stages
in 14 minutes and 46 seconds
# v3.0.0
**User Facing**
*
**Background**
*Known Bugs*
* Vizapp does not yet work for Astrocyte
* Running in CLI: to set --fastq path of file/s needs to be in quotes
# v2.2.0
**User Facing**
* Add cellranger version 4.0.0
......@@ -10,7 +20,6 @@
* Vizapp does not yet work for Astrocyte
* Running in CLI: to set --fastq path of file/s needs to be in quotes
# v2.1.1
**User Facing**
* Check Design File for spaces in name and file contents
......
......@@ -64,7 +64,7 @@ if (params.astrocyte) {
params.genomeLocationFull = params.genomeLocation+params.genome
// Define variables from input
pipelineVersion = "2.2.0"
pipelineVersion = "3.0.0_indev"
name = params.name
designLocation = Channel
.fromPath(params.designFile)
......
......@@ -48,6 +48,6 @@ manifest {
homePage = 'https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count'
description = 'This pipeline is a wrapper for the cellranger count tool from 10x Genomics. It takes fastq files from 10x Genomics Single Cell Gene Expression libraries, performs alignment, filtering, barcode counting, and UMI counting. It uses the Chromium cellular barcodes to generate gene-barcode matrices, determine clusters, and perform gene expression analysis.'
mainScript = 'main.nf'
version = '2.2.0'
version = '4.0.0_indev'
nextflowVersion = '>=0.31.0'
}
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