From 70e3c6e48f3eb2fb449dd8709aadc740e244c371 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 3 Nov 2020 12:26:17 -0600
Subject: [PATCH] Prep 3.0.0 indev
---
CHANGELOG.md | 11 ++++++++++-
workflow/main.nf | 2 +-
workflow/nextflow.config | 2 +-
3 files changed, 12 insertions(+), 3 deletions(-)
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 02e02c7..4205294 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,3 +1,13 @@
+# v3.0.0
+**User Facing**
+*
+
+**Background**
+
+*Known Bugs*
+* Vizapp does not yet work for Astrocyte
+* Running in CLI: to set --fastq path of file/s needs to be in quotes
+
# v2.2.0
**User Facing**
* Add cellranger version 4.0.0
@@ -10,7 +20,6 @@
* Vizapp does not yet work for Astrocyte
* Running in CLI: to set --fastq path of file/s needs to be in quotes
-
# v2.1.1
**User Facing**
* Check Design File for spaces in name and file contents
diff --git a/workflow/main.nf b/workflow/main.nf
index c11872f..532b661 100755
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -64,7 +64,7 @@ if (params.astrocyte) {
params.genomeLocationFull = params.genomeLocation+params.genome
// Define variables from input
-pipelineVersion = "2.2.0"
+pipelineVersion = "3.0.0_indev"
name = params.name
designLocation = Channel
.fromPath(params.designFile)
diff --git a/workflow/nextflow.config b/workflow/nextflow.config
index 779748f..f9a8e55 100644
--- a/workflow/nextflow.config
+++ b/workflow/nextflow.config
@@ -48,6 +48,6 @@ manifest {
homePage = 'https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count'
description = 'This pipeline is a wrapper for the cellranger count tool from 10x Genomics. It takes fastq files from 10x Genomics Single Cell Gene Expression libraries, performs alignment, filtering, barcode counting, and UMI counting. It uses the Chromium cellular barcodes to generate gene-barcode matrices, determine clusters, and perform gene expression analysis.'
mainScript = 'main.nf'
- version = '2.2.0'
+ version = '4.0.0_indev'
nextflowVersion = '>=0.31.0'
}
--
GitLab