Change output of seurat objects

workflow/main.nf

@@ -26,6 +26,7 @@ params.expectCells = 10000
 params.forceCells = 0
 params.kitVersion = '3GEXv3'
 params.version = '4.0.0'
+params.vizFiles = true
 params.astrocyte = false
 params.outDir = "${baseDir}/output"
 
@@ -384,7 +385,7 @@ downstreamVizIn = downstream_vizScript.combine(versions_seuratScript).combine(fi
  */
 process downstreamViz {
   tag "${sample}"
-  publishDir "${outDir}/${task.process}", mode: 'copy', pattern: "*.rds"
+  publishDir "${outDir}/seurat", mode: 'copy', pattern: "*.rds"
   module 'seurat/3.0.0'
 
   input: