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Resolve "Generate Raw RDS file"

Gervaise Henry requested to merge 50-seurat.object into develop

Create raw Seurat object with cellranger_count output Includes:

  • cellranger filtered cells (cells without background)
  • cellranger calculated dimensional reduction:
    • PCA
    • tSNE
    • UMAP (if late enough cellranger version used)
  • all cellranger calculated clustering

PR checklist

  • This comment contains a description of changes (with reason)
  • If you've fixed a bug or added code that should be tested, add tests!
  • Documentation in docs is updated
  • is updated
  • is updated
  • is updated with new contributors

/cc @ghenry

Edited by Gervaise Henry

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