Resolve "Generate Raw RDS file"
Create raw Seurat object with cellranger_count output Includes:
- cellranger filtered cells (cells without background)
- cellranger calculated dimensional reduction:
- PCA
- tSNE
- UMAP (if late enough cellranger version used)
- all cellranger calculated clustering
PR checklist
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This comment contains a description of changes (with reason) -
If you've fixed a bug or added code that should be tested, add tests! -
Documentation in docs
is updated -
CHANGELOG.md
is updated -
README.md
is updated -
LICENSE.md
is updated with new contributors
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Close issue
Closes #50 (closed)
/cc @ghenry