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Merged
Created Aug 14, 2020 by Gervaise Henry@ghenry🤠Maintainer7 of 7 tasks completed7/7 tasks

Resolve "Generate Raw RDS file"

  • Overview 0
  • Commits 32
  • Pipelines 4
  • Changes 15

Create raw Seurat object with cellranger_count output Includes:

  • cellranger filtered cells (cells without background)
  • cellranger calculated dimensional reduction:
    • PCA
    • tSNE
    • UMAP (if late enough cellranger version used)
  • all cellranger calculated clustering

PR checklist

  • This comment contains a description of changes (with reason)
  • If you've fixed a bug or added code that should be tested, add tests!
  • Documentation in docs is updated
  • CHANGELOG.md is updated
  • README.md is updated
  • LICENSE.md is updated with new contributors
  • Close issue
    Closes #50 (closed)

/cc @ghenry

Edited Aug 14, 2020 by Gervaise Henry
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Source branch: 50-seurat.object