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Commit 3206a051 authored by Gervaise Henry's avatar Gervaise Henry 🤠
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Change output of seurat objects

parent d907644c
2 merge requests!78Develop,!76Resolve "Generate Raw RDS file"
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workflow/main.nf
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...@@ -26,6 +26,7 @@ params.expectCells = 10000 ...@@ -26,6 +26,7 @@ params.expectCells = 10000
params.forceCells = 0 params.forceCells = 0
params.kitVersion = '3GEXv3' params.kitVersion = '3GEXv3'
params.version = '4.0.0' params.version = '4.0.0'
params.vizFiles = true
params.astrocyte = false params.astrocyte = false
params.outDir = "${baseDir}/output" params.outDir = "${baseDir}/output"
...@@ -384,7 +385,7 @@ downstreamVizIn = downstream_vizScript.combine(versions_seuratScript).combine(fi ...@@ -384,7 +385,7 @@ downstreamVizIn = downstream_vizScript.combine(versions_seuratScript).combine(fi
*/ */
process downstreamViz { process downstreamViz {
tag "${sample}" tag "${sample}"
publishDir "${outDir}/${task.process}", mode: 'copy', pattern: "*.rds" publishDir "${outDir}/seurat", mode: 'copy', pattern: "*.rds"
module 'seurat/3.0.0' module 'seurat/3.0.0'
input: input:
......
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