From 3206a051dce274192ff854ff69f5b063fc6be786 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 14 Aug 2020 12:37:32 -0500
Subject: [PATCH] Change output of seurat objects
---
workflow/main.nf | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index b9d4fa0..7af1756 100755
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -26,6 +26,7 @@ params.expectCells = 10000
params.forceCells = 0
params.kitVersion = '3GEXv3'
params.version = '4.0.0'
+params.vizFiles = true
params.astrocyte = false
params.outDir = "${baseDir}/output"
@@ -384,7 +385,7 @@ downstreamVizIn = downstream_vizScript.combine(versions_seuratScript).combine(fi
*/
process downstreamViz {
tag "${sample}"
- publishDir "${outDir}/${task.process}", mode: 'copy', pattern: "*.rds"
+ publishDir "${outDir}/seurat", mode: 'copy', pattern: "*.rds"
module 'seurat/3.0.0'
input:
--
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