diff --git a/workflow/main.nf b/workflow/main.nf index b9d4fa0792fff5dbc2eb109339dacc9826f04c74..7af1756fa17ea992bf3ef0b03d87d15228fde720 100755 --- a/workflow/main.nf +++ b/workflow/main.nf @@ -26,6 +26,7 @@ params.expectCells = 10000 params.forceCells = 0 params.kitVersion = '3GEXv3' params.version = '4.0.0' +params.vizFiles = true params.astrocyte = false params.outDir = "${baseDir}/output" @@ -384,7 +385,7 @@ downstreamVizIn = downstream_vizScript.combine(versions_seuratScript).combine(fi */ process downstreamViz { tag "${sample}" - publishDir "${outDir}/${task.process}", mode: 'copy', pattern: "*.rds" + publishDir "${outDir}/seurat", mode: 'copy', pattern: "*.rds" module 'seurat/3.0.0' input: