Commit 79e40633 authored by Gervaise Henry's avatar Gervaise Henry 🤠
Browse files

Add all library options to main.nf

parent 70e3c6e4
......@@ -44,7 +44,9 @@ if (params.astrocyte) {
} else {
params.genomeLocation = '/project/apps_database/cellranger/refdata-cellranger-'
}
if (params.kitVersion == "3GEXv1") {
if (params.kitVersion == "3GEX") {
params.chemistryParam ='threeprime'
} else if (params.kitVersion == "3GEXv1") {
params.chemistryParam ='SC3Pv1'
} else if (params.kitVersion == "3GEXv2") {
params.chemistryParam ='SC3Pv2'
......@@ -52,6 +54,10 @@ if (params.astrocyte) {
params.chemistryParam ='SC3Pv3'
} else if (params.kitVersion == "5GEX") {
params.chemistryParam ='fiveprime'
} else if (params.kitVersion == "5GEXPE") {
params.chemistryParam ='SC5P-PE'
} else if (params.kitVersion == "5GEXSE") {
params.chemistryParam ='SC5P-R2'
} else {
params.chemistryParam = 'auto'
}
......
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