Commits · eddf3c14669bde8ee8faf9ca39ae6c7f836fc7df · GUDMAP_RBK / RNA-seq

Jul 30, 2020
- Fix pytest for parseMetadata: expect fail #54 · eddf3c14
  Gervaise Henry authored 4 years ago
  
  eddf3c14
- Add pytest for parseMetadata: expect fail #54 · 5c4e2529
  Gervaise Henry authored 4 years ago
  
  5c4e2529
- Fix dataQC unit test: addition worked #48 · b702f897
  Gervaise Henry authored 4 years ago
  
  b702f897
- Test unit test addition for #48 · 419fa8c6
  Gervaise Henry authored 4 years ago
  
  419fa8c6
- Add initial trial for dataQC unit improvement #48 · 6ed76f56
  Gervaise Henry authored 4 years ago
  
  6ed76f56
- Merge branch 'aws.batch' into 'develop' · fa5e0d39
  Venkat Malladi authored 4 years ago
```
aws.batch

See merge request !34
```
  fa5e0d39
- Add back trackStart process · d691c1cf
  Gervaise Henry authored 4 years ago
  
  d691c1cf
- Update merge request template · 79306a34
  Gervaise Henry authored 4 years ago
  
  79306a34
- Update dag · 7946823f
  Gervaise Henry authored 4 years ago
  
  7946823f
- Add fastqc commad to unit now that using singularity run · 2c60afce
  Gervaise Henry authored 4 years ago
  
  2c60afce
- Revert fastq unit to singularity run · a70781aa
  Gervaise Henry authored 4 years ago
  
  a70781aa
- Try singularity exec for fastqc unit test · 24284602
  Gervaise Henry authored 4 years ago
  
  24284602
- Add new docker images to CI · d6f6fd25
  Gervaise Henry authored 4 years ago
  
  d6f6fd25
Jul 23, 2020
- Update README.md · 0dbc77e0
  Gervaise Henry authored 4 years ago
  
  0dbc77e0
- AWS Batch works · 9fe16dfb
  Gervaise Henry authored 4 years ago
  
  9fe16dfb
Jul 15, 2020
- Merge branch '10-process.aggregateQC' into 'develop' · 54da2992
  Venkat Malladi authored 4 years ago
```
Resolve "process_qc"

Closes #10

See merge request !33
```
  54da2992
- Move createTestData to test_data · 460d9e53
  Gervaise Henry authored 4 years ago
  
  460d9e53
Jul 14, 2020
- Update docs/dag.png · 59ed6f05
  Gervaise Henry authored 4 years ago
  
  59ed6f05
- Update README.md · f3e1ea29
  Gervaise Henry authored 4 years ago
  
  f3e1ea29
- Return background run to integratiion · 8d3d9dea
  Gervaise Henry authored 4 years ago
  
  8d3d9dea
- Reformat runtime info · 3ab2e9b3
  Gervaise Henry authored 4 years ago
  
  3ab2e9b3
- Remove nextflow -bg from integration test · 299899f4
  Gervaise Henry authored 4 years ago
  
  299899f4
- Add pipeline version var to track · 113f2b7c
  Gervaise Henry authored 4 years ago
  
  113f2b7c
- Update nextflow and singularity versions in CI · 98cf06b5
  Gervaise Henry authored 4 years ago
  
  98cf06b5
- Fix param reference in runtime info · 7f7e0e9d
  Gervaise Henry authored 4 years ago
  
  7f7e0e9d
- Add runtime info · 92edc38f
  Gervaise Henry authored 4 years ago
  
  92edc38f
- Add unsorted deduped bam to test_data creation · 7afd0f5e
  Gervaise Henry authored 4 years ago
  
  7afd0f5e
- Fix new CI unit tests · 3da0fb06
  Gervaise Henry authored 4 years ago
  
  3da0fb06
- Add script to create test data · 5f257a20
  Gervaise Henry authored 4 years ago
  
  5f257a20
- Update CI unit tests to use repRID Q-Y5F6 · 3301ebb4
  Gervaise Henry authored 4 years ago
  
  3301ebb4
- Add unit test run for all mea parseta parsed · 83618d9a
  Gervaise Henry authored 4 years ago
  
  83618d9a
May 20, 2020
- Fix cp error for fastq names with multiple R1/2 · 0c3d1a1e
  Gervaise Henry authored 4 years ago
  
  0c3d1a1e
May 13, 2020
- Stage experiment settings as ExperimentSettings.csv to prevent bash error · ea8a2c38
  Gervaise Henry authored 4 years ago
  
  ea8a2c38
May 11, 2020
- Add source param for getBag #50 · a36c189e
  Gervaise Henry authored 4 years ago
  
  a36c189e
May 06, 2020
- Fix fastq output name fix · 178ac5c0
  Gervaise Henry authored 4 years ago
  
  178ac5c0
- Fix fastq output name · 77800005
  Gervaise Henry authored 4 years ago
  
  77800005
- Generalize destination filename for fastq qxtraction · a3839184
  Gervaise Henry authored 4 years ago
  
  a3839184
- Generalize find fastq after fetch · c02d977a
  Gervaise Henry authored 4 years ago
  
  c02d977a
May 05, 2020
- Change to staging.gudmap.org · ebab7cd7
  Gervaise Henry authored 4 years ago
  
  ebab7cd7
May 04, 2020
- Change fetched fastq's mv to cv... mv was truncating some files · 0c0407f9
  Gervaise Henry authored 4 years ago
  
  0c0407f9