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Commit 0dbc77e0 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Update README.md

parent 9fe16dfb
2 merge requests!37v0.0.1,!34aws.batch
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......@@ -37,7 +37,12 @@ To Run:
* `--refMoVersion` mouse reference version ***(optional)***
* `--refHuVersion` human reference version ***(optional)***
* `--refERCCVersion` human reference version ***(optional)***
* `-profile` config profile to use: standard = processes on BioHPC cluster, aws_ondemand = AWS Batch on-demand instant requests, aws_spot = AWS Batch spot instance requests ***(optional)***
* `-profile` config profile to use ***(optional)***:
* defaut = processes on BioHPC cluster
* **biohpc** = process on BioHPC cluster
* **biohpc_max** = process on high power BioHPC cluster nodes (=> 128GB nodes), for resource testing
* **aws_ondemand** = AWS Batch on-demand instant requests
* **aws_spot** = AWS Batch spot instance requests
* NOTES:
* once deriva-auth is run and authenticated, the two files above are saved in ```~/.deriva/``` (see official documents from [deriva](https://github.com/informatics-isi-edu/deriva-client#installer-packages-for-windows-and-macosx) on the lifetime of the credentials)
* reference version consists of Genome Reference Consortium version, patch release and GENCODE annotation release # (leaving the params blank will use the default version tied to the pipeline version)
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