Merge branch '10-process.aggregateQC' into 'develop'
Resolve "process_qc" Closes #10 See merge request !33
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- .gitignore 2 additions, 1 deletion.gitignore
- .gitlab-ci.yml 33 additions, 30 deletions.gitlab-ci.yml
- README.md 7 additions, 0 deletionsREADME.md
- docs/dag.png 0 additions, 0 deletionsdocs/dag.png
- test_data/createTestData.sh 104 additions, 0 deletionstest_data/createTestData.sh
- workflow/conf/biohpc.config 4 additions, 1 deletionworkflow/conf/biohpc.config
- workflow/conf/multiqc_config.yaml 109 additions, 0 deletionsworkflow/conf/multiqc_config.yaml
- workflow/nextflow.config 3 additions, 0 deletionsworkflow/nextflow.config
- workflow/rna-seq.nf 362 additions, 229 deletionsworkflow/rna-seq.nf
- workflow/scripts/bdbagFetch.sh 5 additions, 5 deletionsworkflow/scripts/bdbagFetch.sh
- workflow/scripts/parseMeta.py 18 additions, 1 deletionworkflow/scripts/parseMeta.py
- workflow/scripts/tinHist.py 39 additions, 0 deletionsworkflow/scripts/tinHist.py
- workflow/tests/test_alignReads.py 6 additions, 6 deletionsworkflow/tests/test_alignReads.py
- workflow/tests/test_dataQC.py 1 addition, 1 deletionworkflow/tests/test_dataQC.py
- workflow/tests/test_dedupReads.py 8 additions, 8 deletionsworkflow/tests/test_dedupReads.py
- workflow/tests/test_fastqc.py 1 addition, 1 deletionworkflow/tests/test_fastqc.py
- workflow/tests/test_getBag.py 1 addition, 1 deletionworkflow/tests/test_getBag.py
- workflow/tests/test_getData.py 2 additions, 2 deletionsworkflow/tests/test_getData.py
- workflow/tests/test_inferMetadata.py 1 addition, 1 deletionworkflow/tests/test_inferMetadata.py
- workflow/tests/test_makeBigWig.py 1 addition, 1 deletionworkflow/tests/test_makeBigWig.py
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