Resolve "process_qc"

Primarily QC processes (including multiqc)... Also includes A LOT of small changes (including minor refactoring to harmonize io and logging)...

PR checklist

• This comment contains a description of changes (with reason)
• If you've fixed a bug or added code that should be tested, add tests!
• Documentation in docs is updated
• Replace dag.png with the most recent CI pipleine integrated_pe artifact
• CHANGELOG.md is updated
• README.md is updated
• LICENSE.md is updated with new contributors

• Close issue
  Closes #10 (closed) Closes #51 (closed)

/cc @ghenry @venkat.malladi

changed milestone to %v0.0.1

added Doing label

marked the checklist item This comment contains a description of changes (with reason) as completed

marked the checklist item If you've fixed a bug or added code that should be tested, add tests! as completed

marked the checklist item Documentation in docs is updated as completed

marked the checklist item *Close issue* as completed

changed the description

added 1 commit

• f3e1ea29 - Update README.md

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added 1 commit

• 59ed6f05 - Update docs/dag.png

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marked the checklist item README.md is updated as completed

marked the checklist item Replace dag.png with the most recent CI pipleine integrated_pe artifact as completed

added 1 commit

• 460d9e53 - Move createTestData to test_data

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enabled an automatic merge when the pipeline for 460d9e53 succeeds

changed the description

merged

mentioned in commit 54da2992