Commits · develop · GUDMAP_RBK / RNA-seq

06 May, 2021 5 commits
- Add container for new process · 9690aab3
  Gervaise Henry authored May 06, 2021
  
  9690aab3
- Add new process to configs · 8d80de50
  Gervaise Henry authored May 06, 2021
  
  8d80de50
- Fix new pre fail · 5c11e089
  Gervaise Henry authored May 06, 2021
  
  5c11e089
- Add new fail pre ex run for seqwho · e5783b29
  Gervaise Henry authored May 06, 2021
  
  e5783b29
- Change spike from infer to meta for uploadExecutionRun · aaac13e4
  Gervaise Henry authored May 06, 2021
  
  aaac13e4
22 Apr, 2021 1 commit
- Fix fail pre ex run dependency on infferd meta · a35b8fe2
  Gervaise Henry authored Apr 22, 2021
  
  a35b8fe2
20 Apr, 2021 1 commit
- Fix seqwho errors · f9f3d1ea
  Gervaise Henry authored Apr 20, 2021
  
  f9f3d1ea
13 Apr, 2021 2 commits
- Fix failPreExecutionRun error collection · c0e6c659
  Gervaise Henry authored Apr 13, 2021
  
  c0e6c659
- Fix fetch fastq count · 96fc2b71
  Gervaise Henry authored Apr 13, 2021
  
  96fc2b71
12 Apr, 2021 14 commits
- Use v2.0.0 for aws env test · 0d36671f
  Gervaise Henry authored Apr 12, 2021
  
  0d36671f
- Remove local executor from aws config · 3add27fa
  Gervaise Henry authored Apr 12, 2021
  
  3add27fa
- Update aws resources · f9e50ab2
  Gervaise Henry authored Apr 12, 2021
  
  f9e50ab2
- Replace track · 9b65a0ea
  Gervaise Henry authored Apr 12, 2021
  
  9b65a0ea
- Temporarily change aws env test to use dev · 4037ad2c
  Gervaise Henry authored Apr 12, 2021
  
  4037ad2c
- Temporarily change aws env test to use dev · 0a66b2e2
  Gervaise Henry authored Apr 12, 2021
  
  0a66b2e2
- Replace track · 57824464
  Gervaise Henry authored Apr 12, 2021
  
  57824464
- Remove track process · c530d874
  Gervaise Henry authored Apr 12, 2021
  
  c530d874
- Change aws queue to priority · f61893a7
  Gervaise Henry authored Apr 12, 2021
  
  f61893a7
- Remove version from aws job · 90560c1c
  Gervaise Henry authored Apr 12, 2021
  
  90560c1c
- Add version to aws job definition · 68876b78
  Gervaise Henry authored Apr 12, 2021
  
  68876b78
- Fix aws status check conditional · 4d0954c1
  Gervaise Henry authored Apr 12, 2021
  
  4d0954c1
- Fix aws status check conditional · 87097361
  Gervaise Henry authored Apr 12, 2021
  
  87097361
- Shorten aws status check · ff3c5146
  Gervaise Henry authored Apr 12, 2021
  
  ff3c5146
30 Mar, 2021 1 commit
- Move fastq count up and remove report from aws ci · 8a2f76ab
  Gervaise Henry authored Mar 30, 2021
  
  8a2f76ab
21 Mar, 2021 11 commits
- Merge branch 'master' into 'develop' · b88a78cb
  Gervaise Henry authored Mar 21, 2021
```
Hardwire pipeline version for env tests

See merge request !80
```
  b88a78cb
- Hardwire pipeline version for env tests · aa0103d0
  Gervaise Henry authored Mar 21, 2021
  
  aa0103d0
- Merge branch 'master' into 'develop' · 2d79f649
  Gervaise Henry authored Mar 21, 2021
```
Master

See merge request !79
```
  2d79f649
- Split aws exports · 56f97599
  Gervaise Henry authored Mar 21, 2021
  
  56f97599
- Put aws ci exports on same line · 7c31f438
  Gervaise Henry authored Mar 21, 2021
  
  7c31f438
- Use base singularity for env latest get · 00eb7f47
  Gervaise Henry authored Mar 21, 2021
  
  00eb7f47
- Update minimum nextflow version · 023e4484
  Gervaise Henry authored Mar 21, 2021
  
  023e4484
- Merge branch 'master' into 'develop' · fb4176a4
  Gervaise Henry authored Mar 21, 2021
```
Master

See merge request !78
```
  fb4176a4
- Resolve merge · debadf08
  Gervaise Henry authored Mar 21, 2021
  
  debadf08
- Finalize v2.0.0 version in manifest · 5ac7bb64
  Gervaise Henry authored Mar 21, 2021
  
  5ac7bb64
- Fix staging error rep count · b6ec0946
  Gervaise Henry authored Mar 21, 2021
  
  b6ec0946
20 Mar, 2021 5 commits
- Merge branch 'develop' into 'docs' · 1a228df7
  Gervaise Henry authored Mar 20, 2021
```
# Conflicts:
#   .gitlab-ci.yml
#   workflow/scripts/get_updated_rep_count.sh
```
  1a228df7
- Update dag · 11b9d4b0
  Gervaise Henry authored Mar 20, 2021
  
  11b9d4b0
- Fix the hub count badges · 6233f499
  Gervaise Henry authored Mar 20, 2021
  
  6233f499
- Finalize pre release · 50b56cab
  Gervaise Henry authored Mar 20, 2021
  
  50b56cab
- Merge branch 'env.ci' into 'develop' · 4cd2c453
  Venkat Malladi authored Mar 20, 2021
```
Env.ci

See merge request !75
```
  4cd2c453