Change the way nodefaults is done

workflow/scripts/upload_execution_run.py

@@ -41,7 +41,7 @@ def main(hostname, catalog_number, credential):
             "Execution_Status": args.status,
             "Execution_Status_Detail": args.statusDetail.replace('\\n','\n')
         }
-        entities = run_table.insert([run_data], nondefaults={"RCB", "RMB"})
+        entities = run_table.insert([run_data], add_system_defaults=False, defaults={"RID", "RCT", "RMT"})
         rid = entities[0]["RID"]
     else:
         run_data = {

workflow/scripts/upload_input_bag.py

@@ -39,7 +39,7 @@ def main(hostname, catalog_number, credential):
         "Bag_Type": "Replicate_Input_Seq"
         }
 
-    entities = inputBag_table.insert([inputBag_data], nondefaults={"RCB", "RMB"})
+    entities = inputBag_table.insert([inputBag_data], add_system_defaults=False, defaults={"RID", "RCT", "RMT"})
     rid = entities[0]["RID"]
 
     print(rid)

workflow/scripts/upload_output_bag.py

@@ -42,7 +42,7 @@ def main(hostname, catalog_number, credential):
             "Notes": args.notes,
             "Bag_Type": "mRNA_Replicate_Analysis"
         }
-        entities = outputBag_table.insert([outputBag_data], nondefaults={"RCB", "RMB"})
+        entities = outputBag_table.insert([outputBag_data], add_system_defaults=False, defaults={"RID", "RCT", "RMT"})
         rid = entities[0]["RID"]
 
     else:
@@ -50,7 +50,7 @@ def main(hostname, catalog_number, credential):
             "RID": args.update,
             "Execution_Run": args.executionRunRID
         }
-        entities = outputBag_table.insert([outputBag_data], nondefaults={"RCB", "RMB"})
+        entities = outputBag_table.insert([outputBag_data], add_system_defaults=False, defaults={"RID", "RCT", "RMT"})
         rid = entities[0]["RID"]
 
     print(rid)

workflow/scripts/upload_qc.py

@@ -45,14 +45,14 @@ def main(hostname, catalog_number, credential):
             "Median_TIN": args.tin,
             "Notes": args.notes
         }
-        entities = run_table.insert([run_data], nondefaults={"RCB", "RMB"})
+        entities = run_table.insert([run_data], add_system_defaults=False, defaults={"RID", "RCT", "RMT"})
         rid = entities[0]["RID"]
     elif args.update == "E":
         run_data = {
             "Execution_Run": args.executionRunRID,
             "Replicate": args.repRID
         }
-        entities = run_table.insert([run_data], nondefaults={"RCB", "RMB"})
+        entities = run_table.insert([run_data], add_system_defaults=False, defaults={"RID", "RCT", "RMT"})
         rid = entities[0]["RID"]
     else:
         run_data = {